Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001168`

染色体: Chr03 坐标: 13444934-13446236 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001168`
名称	SmilChr03G001168
描述	F-box/kelch-repeat protein At3g23880-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	13444934 - 13446236 / `+`

ID 对照

NCBI Gene ID	`LOC131018385`
GeneID	`131018385`
locus_tag	`-`
NCBI Name	`LOC131018385`
原始查询	`SmilChr03G001168`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/kelch-repeat protein At3g23880-like
产物	F-box/kelch-repeat protein At3g23880-like
Arabidopsis	`AT3G23880` (AT3G23880) F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:821971] identity=26.3; qcov=0.951; evalue=2.61e-19; confidence=low
Rice	`Os09g0479100` (OsFbox492) - identity=28.2; qcov=0.716; evalue=5.7e-13; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF07734 (FBA_1); PF08268 (FBA_3); PF12937 (F-box-like)
InterPro	-
eggNOG	-
NR	GeneID:131018385

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057803096.1`
2	Cytoplasm	细胞质	1.00000	`XP_057803096.1`
3	Cytosol	细胞质基质	0.20000	`XP_057803096.1`
4	Chromosome	染色体	0.00000	`XP_057803096.1`
5	Centromere	着丝粒	0.00000	`XP_057803096.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:13445060`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B2,B59,B94,C12,C50
`Chr3:13445165`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B65,C20,C6
`Chr3:13445182`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A24,C61,D3
`Chr3:13445275`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A16,C78
`Chr3:13445325`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B77,B87,C3,C59,C83
`Chr3:13445352`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A22,B63,B83,C27
`Chr3:13445379`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A13,B115,B72
`Chr3:13445437`	`CA`	`C`	1bp_deletion	frameshift_variant	1	C84
`Chr3:13445437`	`CA`	`C`	1bp_deletion	CDS_variant	1	C84
`Chr3:13445592`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:13445635`	`G`	`A`	EMS_canonical_SNV	stop_gained	44	A16,A22,A25,A8,B101,B11,B114,B12,B120,B129,B132,B133,B14,B16,B27,B32,B34,B51,B52,B55,B58,B74,B79,B82,B88,B89,B9,B92,C22,C29,C31,C34,C41,C54,C55,C56,C63,C67,C68,C7,C72,C81,C82,C87
`Chr3:13445922`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A22,B63,B83,C27

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803096.1

391 aa

196

391

F-box

F-box-like

FBA_3

FBA_1

PF00646 F-box 42-76 aa PF12937 F-box-like 43-76 aa PF08268 FBA_3 138-278 aa PF07734 FBA_1 144-336 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057803096.1`	Pfam	`PF00646`	F-box	Domain	42	76	2.1e-10	40.8	F-box domain
`XP_057803096.1`	Pfam	`PF12937`	F-box-like	Domain	43	76	1.1e-06	29.0	F-box-like
`XP_057803096.1`	Pfam	`PF08268`	FBA_3	Repeat	138	278	7e-11	42.4	F-box associated beta propeller domain
`XP_057803096.1`	Pfam	`PF07734`	FBA_1	Repeat	144	336	4.7e-16	59.4	F-box associated beta propeller domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057947113.1
ATGAAGAATGAGAAGAAAGTTCAACAATTTCTTTCAAGAAGTGCTAGAATAGGCAGAAGAAGAAGAAGAATAAGAAGAAGAAGAGGAAGAAGAGGACGAAGAAGAAGAAGAAATCAGCAATCTCTCCATCTTCCGGAAGCAATCATTGAAGAAGTACTGTCAAGATTGCCAGTGCAATCACTGTTGAGATTGAGGTGCGTTTCGAAATCATGGGGCTCTTTAATTGGCTGCGAACGCTTCATCAAAACGCATCATCAAAA...

CDS

1 records

下载 CDS FASTA

LOC131018385
ATGAAGAATGAGAAGAAAGTTCAACAATTTCTTTCAAGAAGTGCTAGAATAGGCAGAAGAAGAAGAAGAATAAGAAGAAGAAGAGGAAGAAGAGGACGAAGAAGAAGAAGAAATCAGCAATCTCTCCATCTTCCGGAAGCAATCATTGAAGAAGTACTGTCAAGATTGCCAGTGCAATCACTGTTGAGATTGAGGTGCGTTTCGAAATCATGGGGCTCTTTAATTGGCTGCGAACGCTTCATCAAAACGCATCATCAAAA...

Protein

1 records

下载 Protein FASTA

XP_057803096.1
MKNEKKVQQFLSRSARIGRRRRRIRRRRGRRGRRRRRNQQSLHLPEAIIEEVLSRLPVQSLLRLRCVSKSWGSLIGCERFIKTHHQNSIKNPSFPHQRVFLQKETFGRCVQCSLQSILRARVSPSPLADPTNTTLMPSLTLGCYNGLLCILDESRRRIELWNPSTRISKKLLEISSPSYVMSSGFGWVESSGEYKVFVLLVNIIDNDEWKRVGKVYSSKTKTWKTIEFCDDLLWCWIGGWFAGGKLYWQKTEDDQEDIIF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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