Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001170`

染色体: Chr03 坐标: 13459272-13460810 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001170`
名称	SmilChr03G001170
描述	F-box/kelch-repeat protein At3g23880-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	13459272 - 13460810 / `+`

ID 对照

NCBI Gene ID	`LOC131017565`
GeneID	`131017565`
locus_tag	`-`
NCBI Name	`LOC131017565`
原始查询	`SmilChr03G001170`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/kelch-repeat protein At3g23880-like
产物	F-box/kelch-repeat protein At3g23880-like
Arabidopsis	`AT3G06240` (AT3G06240) F-box family protein [Source:NCBI gene (formerly Entrezgene);Acc:819798] identity=25.3; qcov=1.1; evalue=1.18e-17; confidence=low
Rice	`Os09g0479100` (OsFbox492) - identity=27.3; qcov=0.777; evalue=2.73e-12; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF07734 (FBA_1); PF08268 (FBA_3); PF12937 (F-box-like)
InterPro	-
eggNOG	-
NR	GeneID:131017565

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057802350.1`
2	Cytoplasm	细胞质	1.00000	`XP_057802350.1`
3	Cytosol	细胞质基质	0.20000	`XP_057802350.1`
4	Chromosome	染色体	0.00000	`XP_057802350.1`
5	Centromere	着丝粒	0.00000	`XP_057802350.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:13459694`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A1,B129,B59,B94
`Chr3:13459703`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B105,B13,B140
`Chr3:13459741`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B107,C74
`Chr3:13459762`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B90,C44,C63,C69
`Chr3:13459855`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B79,C62,C85,C86
`Chr3:13460254`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B102,B119,B18
`Chr3:13460494`	`T`	`TA`	1bp_insertion	frameshift_variant	1	D10
`Chr3:13460494`	`T`	`TA`	1bp_insertion	CDS_variant	1	D10
`Chr3:13460512`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A9,B103,B9,C22,C57

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802350.1

386 aa

193

386

F-box

F-box-like

FBA_3

FBA_1

PF00646 F-box 44-78 aa PF12937 F-box-like 47-78 aa PF08268 FBA_3 128-320 aa PF07734 FBA_1 144-332 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802350.1`	Pfam	`PF00646`	F-box	Domain	44	78	1.6e-09	38.0	F-box domain
`XP_057802350.1`	Pfam	`PF12937`	F-box-like	Domain	47	78	1.2e-05	25.6	F-box-like
`XP_057802350.1`	Pfam	`PF08268`	FBA_3	Repeat	128	320	1e-11	45.2	F-box associated beta propeller domain
`XP_057802350.1`	Pfam	`PF07734`	FBA_1	Repeat	144	332	1.4e-17	64.4	F-box associated beta propeller domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057946367.1
TGATTCCCCGAAAGCCATATAAAACTATTTGTTGGAAATACAAAAACCTAAAACCCTCGCCTCTTCAAATACAGAAACCCTCGAAACATATATTGAAGATTTGGCAGTGGAGATCGAAAGCAGTAGTCAACAACACCATCGCCATGTGACGCCACCACACCCGTACCATCATCTTCCTTGATTTCCGCCGGTTTTGGTCTTGCTAAGATGAAGAATGAGAAGAAAGTTCAAAAATTTCTTTCAAGAAGTGCTAGAATAGG...

CDS

1 records

下载 CDS FASTA

LOC131017565
ATGAAGAATGAGAAGAAAGTTCAAAAATTTCTTTCAAGAAGTGCTAGAATAGGCAGAAGAAGAAGAAGAGTAAGAAGAAGAAGAAGAAGAGGAAGAAGAGGACGAAGAAGAAGAAGAAATCAGCAATCTCTCCATTTTCCGGAAGCAATCATTGAAGAAGTACTGTCAAGATTGCCAGTGCAATCACTGTTGAGATTGAGGTGCGTTTCGAAATCATGGGGCTCTTTAATTGGCTGCGAACGCTTCATCAAAACGCATCA...

Protein

1 records

下载 Protein FASTA

XP_057802350.1
MKNEKKVQKFLSRSARIGRRRRRVRRRRRRGRRGRRRRRNQQSLHFPEAIIEEVLSRLPVQSLLRLRCVSKSWGSLIGCERFIKTHHQNSVKNPSFPHQRVFLQKETFGRCVQCSLQSLLSSRVSPSPLPHPTNTTLMPSLTLGCYNGLLCILDEPRRRIELWNPSTRISKKLLEISSPSYVLNLGFGWVESSGEYKVFVLLVDIIDNDEWERVGKVYSSKTKSWKTIEFCDDLLSCWIRGWFAGGKLYWRKTEDDQKDI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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