当前解析结果
SmilChr03G001183| 统一新 Gene ID | SmilChr03G001183 |
|---|---|
| 名称 | SmilChr03G001183 |
| 描述 | uncharacterized SmilChr03G001183 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 13588546 - 13590911 / - |
| NCBI Gene ID | LOC131018392 |
|---|---|
| GeneID | 131018392 |
| locus_tag | - |
| NCBI Name | LOC131018392 |
| 原始查询 | SmilChr03G001183 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3768859]; symbol=MUG7; hit=AT3G05850; species=arabidopsis; confidence=weak |
| 产物 | MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3768859]; symbol=MUG7; hit=AT3G05850; species=arabidopsis; confidence=weak |
| Arabidopsis | AT3G05850 (MUG7)MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3768859] identity=24.4; qcov=0.954; evalue=2.39e-55; confidence=weak |
| Rice | Os12g0597300- identity=26.6; qcov=0.719; evalue=1.65e-51; confidence=low |
| GO | GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF00872 (Transposase_mut); PF04434 (SWIM); PF10551 (MULE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018392 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057803102.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057803102.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057803102.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057803102.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057803102.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:13588560 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B96,C26,C58 |
Chr3:13588577 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B95,B97,C28 |
Chr3:13588590 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | C17 |
Chr3:13588590 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C17 |
Chr3:13588593 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B96,C54 |
Chr3:13588606 |
A |
AG |
1bp_insertion | frameshift_variant | 3 | B102,C22,C49 |
Chr3:13588606 |
A |
AG |
1bp_insertion | CDS_variant | 3 | B102,C22,C49 |
Chr3:13588620 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B102,C22,C49 |
Chr3:13588639 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B33,C23,D2 |
Chr3:13588643 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr3:13588644 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B139,B3,B64,C63 |
Chr3:13588653 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B102,B40,C22,C49 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803102.1PF10551
MULE 400-494 aa
PF00872
Transposase_mut 418-522 aa
PF04434
SWIM 643-673 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803102.1 |
Pfam | PF10551 |
MULE | Domain | 400 | 494 | 5.5e-20 | 72.3 | MULE transposase domain |
XP_057803102.1 |
Pfam | PF00872 |
Transposase_mut | Family | 418 | 522 | 3.6e-10 | 40.0 | Transposase, Mutator family |
XP_057803102.1 |
Pfam | PF04434 |
SWIM | Domain | 643 | 673 | 7.6e-06 | 26.1 | SWIM zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。