Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001198`

染色体: Chr03 坐标: 13814444-13815013 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001198`
名称	SmilChr03G001198
描述	F-box/kelch-repeat protein At3g23880-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	13814444 - 13815013 / `+`

ID 对照

NCBI Gene ID	`LOC131018400`
GeneID	`131018400`
locus_tag	`-`
NCBI Name	`LOC131018400`
原始查询	`SmilChr03G001198`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/kelch-repeat protein At3g23880-like
产物	F-box/kelch-repeat protein At3g23880-like
Arabidopsis	`AT3G23880` (AT3G23880) F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:821971] identity=35.3; qcov=0.915; evalue=2.37e-18; confidence=low
Rice	`Os09g0449600` (OsFbox490) - identity=28; qcov=0.963; evalue=9.83e-14; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF12937 (F-box-like)
InterPro	-
eggNOG	-
NR	GeneID:131018400

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057803109.1`
2	Cytoplasm	细胞质	0.60000	`XP_057803109.1`
3	Cytosol	细胞质基质	0.20000	`XP_057803109.1`
4	Chromosome	染色体	0.00000	`XP_057803109.1`
5	Centromere	着丝粒	0.00000	`XP_057803109.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:13814607`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:13814641`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B111
`Chr3:13814673`	`CAA`	`C`	2bp_deletion	frameshift_variant	33	A14,A15,A22,A23,A4,A7,B1,B12,B122,B126,B17,B21,B31,B42,B43,B44,B58,B59,B6,B67,B68,B69,B74,B91,C18,C40,C46,C47,C61,C7,C72,D3,D8
`Chr3:13814680`	`T`	`TTC`	2bp_insertion	frameshift_variant	36	A14,A15,A22,A23,A4,A7,B1,B12,B122,B126,B137,B17,B21,B22,B31,B42,B43,B44,B58,B59,B6,B67,B68,B69,B74,B91,C18,C40,C46,C47,C58,C61,C7,C72,D3,D8
`Chr3:13814682`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B30,C10,C63,C74
`Chr3:13814704`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C23,C87
`Chr3:13814778`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B13,B82,C31,C67,C77
`Chr3:13814808`	`AC`	`A`	1bp_deletion	frameshift_variant	17	A2,B100,B106,B110,B123,B124,B135,B136,B27,B33,B41,B71,C28,C4,C74,C8,C87
`Chr3:13814809`	`CG`	`C`	1bp_deletion	frameshift_variant	157	A1,A13,A15,A19,A20,A21,A23,A25,A4,A5,A6,A8,A9,B10,B101,B102,B104,B105,B107,B108,B109,B112,B113,B114,B115,B118,B12,B122,B126,B127,B13,B130,B131,B132,B133,B134,B14,B140,B15,B21,B23,B25,B27,B28,B3,B30,B31,B32,B33,B34,B36,B37,B38,B40,B41,B43,B45,B47,B48,B5,B50,B51,B53,B54,B59,B6,B60,B61,B63,B64,B65,B66,B68,B69,B70,B71,B72,B73,B74,B75,B76,B8,B80,B81,B82,B83,B84,B86,B87,B88,B89,B9,B90,B92,B93,B95,B96,B98,B99,C1,C10,C12,C13,C14,C15,C16,C17,C18,C2,C21,C22,C23,C24,C25,C31,C32,C34,C36,C37,C39,C40,C41,C42,C43,C45,C49,C5,C51,C52,C54,C57,C59,C6,C60,C62,C65,C66,C67,C68,C70,C74,C75,C77,C78,C79,C8,C81,C82,C83,C84,C85,C9,D1,D10,D4,D6,D7
`Chr3:13814848`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B5,C54,C79
`Chr3:13814905`	`T`	`TAA`	2bp_insertion	frameshift_variant	94	A1,A10,A14,A15,A16,A18,A19,A25,A5,A7,A8,B104,B105,B113,B122,B125,B127,B131,B134,B135,B138,B14,B17,B19,B2,B20,B22,B27,B29,B3,B31,B35,B36,B38,B39,B40,B41,B44,B45,B46,B48,B49,B51,B54,B55,B56,B58,B59,B62,B75,B79,B80,B81,B85,B89,B92,B94,B96,C10,C12,C14,C16,C17,C19,C20,C21,C3,C35,C47,C48,C50,C51,C52,C53,C56,C58,C59,C61,C62,C64,C72,C73,C74,C80,C81,C82,C86,C9,D1,D10,D11,D5,D6,D9
`Chr3:13814917`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B92

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803109.1

189 aa

189

F-box-like

F-box

PF12937 F-box-like 15-49 aa PF00646 F-box 16-53 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057803109.1`	Pfam	`PF12937`	F-box-like	Domain	15	49	1.9e-07	31.5	F-box-like
`XP_057803109.1`	Pfam	`PF00646`	F-box	Domain	16	53	1.3e-10	41.4	F-box domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057947126.1
ATGGATCGGGAAAACGCTCCTCCTCCGAGCAGGAAACCCCGCTATCTTCCCGAAGAAATAATCGAAGAAATACTGTCAATACTTGCGGCGAAATCACTGCTGAGATTCAGGTGCGTTTCGAAATCATGGCGTTGTTTAATGAGTAGCAAGAGATTCATCAGAACCCAACTCGATAAATCAAGCAATGACCCAACTGCCGCCCATTGGCAAGTTGTGGTCAACTGTGAGTCAAAAAATTCAGTATTTGGATTGAAGCAATG...

CDS

1 records

下载 CDS FASTA

LOC131018400
ATGGATCGGGAAAACGCTCCTCCTCCGAGCAGGAAACCCCGCTATCTTCCCGAAGAAATAATCGAAGAAATACTGTCAATACTTGCGGCGAAATCACTGCTGAGATTCAGGTGCGTTTCGAAATCATGGCGTTGTTTAATGAGTAGCAAGAGATTCATCAGAACCCAACTCGATAAATCAAGCAATGACCCAACTGCCGCCCATTGGCAAGTTGTGGTCAACTGTGAGTCAAAAAATTCAGTATTTGGATTGAAGCAATG...

Protein

1 records

下载 Protein FASTA

XP_057803109.1
MDRENAPPPSRKPRYLPEEIIEEILSILAAKSLLRFRCVSKSWRCLMSSKRFIRTQLDKSSNDPTAAHWQVVVNCESKNSVFGLKQCSVRSYLDDPDVDPFPIDDPTNHHLTTDAYVVGNCDGLICILKKPGSLFLWNPATRISIELPKLDLEIKKYGFGRDEQSGAYKVFVVGSRYEEEEEEEEEEEE

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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