当前解析结果
SmilChr03G001199| 统一新 Gene ID | SmilChr03G001199 |
|---|---|
| 名称 | SmilChr03G001199 |
| 描述 | F-box/kelch-repeat protein At3g06240-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 13831504 - 13832646 / + |
| NCBI Gene ID | LOC131018401 |
|---|---|
| GeneID | 131018401 |
| locus_tag | - |
| NCBI Name | LOC131018401 |
| 原始查询 | SmilChr03G001199 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | F-box/kelch-repeat protein At3g06240-like |
| 产物 | F-box/kelch-repeat protein At3g06240-like |
| Arabidopsis | AT3G06240 (AT3G06240)F-box family protein [Source:NCBI gene (formerly Entrezgene);Acc:819798] identity=25.9; qcov=1.11; evalue=2.45e-21; confidence=low |
| Rice | Os09g0479100 (OsFbox492)- identity=26.7; qcov=0.7; evalue=8.46e-11; confidence=low |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00646 (F-box); PF07734 (FBA_1); PF08268 (FBA_3); PF12937 (F-box-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018401 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057803110.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057803110.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057803110.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057803110.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057803110.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:13831514 |
G |
GA |
1bp_insertion | frameshift_variant | 16 | A14,A5,B100,B104,B118,B120,B125,B129,B22,B79,B94,C56,C7,C72,C73,D5 |
Chr3:13831525 |
C |
T |
EMS_canonical_SNV | stop_gained | 9 | A4,B104,B117,B132,B133,B50,C22,C29,C40 |
Chr3:13831639 |
A |
AG |
1bp_insertion | frameshift_variant | 40 | A11,A19,A2,A3,A4,A6,B100,B103,B112,B117,B125,B126,B133,B14,B2,B33,B47,B56,B57,B65,B66,B95,B99,C24,C26,C27,C32,C33,C42,C44,C49,C5,C56,C57,C60,C63,C68,C69,D2,D7 |
Chr3:13831753 |
C |
T |
EMS_canonical_SNV | stop_gained | 5 | B102,B119,B124,B136,B61 |
Chr3:13831753 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B102,B119,B124,B136,B61 |
Chr3:13831839 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B67,C46 |
Chr3:13831972 |
A |
AAT |
2bp_insertion | frameshift_variant | 4 | B39,B43,B91,D6 |
Chr3:13831972 |
A |
AAT |
2bp_insertion | CDS_variant | 4 | B39,B43,B91,D6 |
Chr3:13832002 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C38 |
Chr3:13832048 |
G |
A |
EMS_canonical_SNV | stop_gained | 16 | A10,A19,B14,B27,B29,B36,B64,B76,B83,C16,C43,C59,C80,C84,C87,D5 |
Chr3:13832049 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | B14,B89 |
Chr3:13832049 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B14,B89 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803110.1PF00646
F-box 11-50 aa
PF12937
F-box-like 12-50 aa
PF08268
FBA_3 103-311 aa
PF07734
FBA_1 151-332 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803110.1 |
Pfam | PF00646 |
F-box | Domain | 11 | 50 | 1.6e-10 | 41.2 | F-box domain |
XP_057803110.1 |
Pfam | PF12937 |
F-box-like | Domain | 12 | 50 | 9.2e-07 | 29.2 | F-box-like |
XP_057803110.1 |
Pfam | PF08268 |
FBA_3 | Repeat | 103 | 311 | 5.1e-12 | 46.2 | F-box associated beta propeller domain |
XP_057803110.1 |
Pfam | PF07734 |
FBA_1 | Repeat | 151 | 332 | 1e-17 | 64.8 | F-box associated beta propeller domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。