Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.

Resolved gene

`SmilChr03G001209`

Chromosome: Chr03 Coordinates: 13927972-13928696 Strand: - Biotype: protein_coding

Basic Information

Standard Gene ID	`SmilChr03G001209`
Name	SmilChr03G001209
Description	6,7,8-trihydroxycoumarin synthase-like
Chromosome / SeqID	Chr03 / NC_080389.1
Coordinates and Strand	13927972 - 13928696 / `-`

ID Mapping

NCBI Gene ID	`LOC131017601`
GeneID	`131017601`
locus_tag	`-`
NCBI Name	`LOC131017601`
Original query	`SmilChr03G001209`

Open ID mapping

Functional Annotation

Source	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
Description	6,7,8-trihydroxycoumarin synthase-like
Product	6%2C7%2C8-trihydroxycoumarin synthase-like
Arabidopsis	`AT3G26330` (CYP71B37) cytochrome P450, family 71, subfamily B, polypeptide 37 [Source:NCBI gene (formerly Entrezgene);Acc:822237] identity=54.3; qcov=0.995; evalue=1.69e-67; confidence=high
Rice	`Os03g0593600` (CYP71W1) - identity=52.2; qcov=0.973; evalue=1.11e-64; confidence=high
GO	GO:0004497 (monooxygenase activity); GO:0005506 (iron ion binding); GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen); GO:0020037 (heme binding)
KEGG	-
Pfam	PF00067 (p450)
InterPro	-
eggNOG	-
NR	GeneID:131017601

Open annotation module

Subcellular Localization Top 5

Rank	Location	Chinese	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057802391.1`
2	Nucleus	细胞核	0.00000	`XP_057802391.1`
3	Chromosome	染色体	0.00000	`XP_057802391.1`
4	Centromere	着丝粒	0.00000	`XP_057802391.1`
5	Chromatin	染色质	0.00000	`XP_057802391.1`

Open subcellular search

EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position	REF	ALT	Type	Effect	Carriers	Samples
`Chr3:13928113`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A7,B62,D3
`Chr3:13928147`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A16,B136,B26
`Chr3:13928152`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B12,B55
`Chr3:13928153`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B24,D7
`Chr3:13928159`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A14,B139,C40
`Chr3:13928164`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C16,C42,C56
`Chr3:13928184`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B49,C82
`Chr3:13928189`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B126
`Chr3:13928198`	`C`	`T`	EMS_canonical_SNV	stop_gained	7	A6,B39,B80,B91,B96,C62,D6
`Chr3:13928222`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B49,C52,C82
`Chr3:13928226`	`C`	`CCG`	2bp_insertion	frameshift_variant	2	B49,C82
`Chr3:13928226`	`C`	`CCG`	2bp_insertion	CDS_variant	2	B49,C82

Open EMS variants

Predicted Protein Domains

Domain results are from the Pfam-A HMM database and HMMER hmmscan; positions are amino-acid coordinates on the corresponding protein sequence.

XP_057802391.1

187 aa

187

p450

PF00067 p450 2-179 aa

Protein ID	Source	Domain ID	Domain name	Type	Start aa	End aa	E-value	Score	Description
`XP_057802391.1`	Pfam	`PF00067`	p450	Domain	2	179	7.8e-58	197.1	Cytochrome P450

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

1 records

Download cDNA FASTA

XM_057946408.1
TTTTTATTGCTGCAACTGATACGACGACTGTCTCAATCGTTTGGACGATGACGGCACTAATGAAAGCGCCCATCGTGATGAAAAAAGTGCAAGCAGAAATCAGAAATTTGATAGGTGAAAAGGGTAAATTAGATGAAGGTGATTTGCCCAACCTTCCCTATTTGACAGCAGTGATTAAGGAGACATTGAGGTTGTACCCTCCAGCTCCACTGCTTGTACCAAGACAAACAATAGAAAAATGCACTCTAGAGGGATACGAG...

CDS

1 records

Download CDS FASTA

LOC131017601
ATGACGGCACTAATGAAAGCGCCCATCGTGATGAAAAAAGTGCAAGCAGAAATCAGAAATTTGATAGGTGAAAAGGGTAAATTAGATGAAGGTGATTTGCCCAACCTTCCCTATTTGACAGCAGTGATTAAGGAGACATTGAGGTTGTACCCTCCAGCTCCACTGCTTGTACCAAGACAAACAATAGAAAAATGCACTCTAGAGGGATACGAGATTCAACCTAATACGGTGGTTTTTGTTAACGTGTGGGCGGTTGCAAG...

Protein

1 records

Download Protein FASTA

XP_057802391.1
MTALMKAPIVMKKVQAEIRNLIGEKGKLDEGDLPNLPYLTAVIKETLRLYPPAPLLVPRQTIEKCTLEGYEIQPNTVVFVNVWAVARDPKYWENPDEFMPERFLNSNIHDITGQDFRAIPFGSGRRICPGMSMGLANVELTVASLLYNFDWEMPEGIKAQDIDTDTVPGITMHKKNPLILVARDYVA

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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