Red Sage Omics 丹参基因组信息平台
首页 基因查询 ID 对照表 功能注释 结构域预测 Pfam 基因组工具 蛋白互作 亚细胞定位 表达量 共表达 同源/共线性 GO/KEGG 注释 TF 结合位点 TF 靶基因 EMS 突变 JBrowse BLAST 下载 关于 帮助
数据资源
ID 对照表 功能注释 功能检索 次生代谢专题 文献证据 结构域预测 Pfam 同源/共线性
分析工具
基因组工具 引物设计 同源重组引物设计 核酸翻译 BLAST 蛋白互作 亚细胞定位 共表达 GO/KEGG 注释 功能检索
调控/突变
TF 结合位点 TF 靶基因 EMS 突变
帮助
关于 帮助 资源与版本
中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G001213

染色体: Chr03 坐标: 13942322-13946713 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G001213
名称SmilChr03G001213
描述probable disease resistance protein At1g58602
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向13942322 - 13946713 / -

ID 对照

NCBI Gene IDLOC131017493
GeneID131017493
locus_tag-
NCBI NameLOC131017493
原始查询SmilChr03G001213

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述probable disease resistance protein At1g58602
产物probable disease resistance protein At1g58602
ArabidopsisAT5G43470 (RPP8)
Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:834367]
identity=32.5; qcov=1.03; evalue=4.71e-131; confidence=low
RiceOs10g0183000 (OsLSR)
-
identity=27.8; qcov=1.02; evalue=4.48e-71; confidence=low
GOGO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG-
PfamPF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro-
eggNOG-
NRGeneID:131017493

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057802226.1
2 Nucleus 细胞核 0.00000 XP_057802226.1
3 Chromosome 染色体 0.00000 XP_057802226.1
4 Centromere 着丝粒 0.00000 XP_057802226.1
5 Chromatin 染色质 0.00000 XP_057802226.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:13943258 C T EMS_canonical_SNV CDS_variant 3 B38,B39,C14
Chr3:13943372 C T EMS_canonical_SNV CDS_variant 5 B2,B74,B94,C27,C60
Chr3:13943486 C T EMS_canonical_SNV CDS_variant 1 C57
Chr3:13943530 C T EMS_canonical_SNV CDS_variant 2 C34,C75
Chr3:13943533 C T EMS_canonical_SNV CDS_variant 2 B140,C77
Chr3:13943547 C T EMS_canonical_SNV CDS_variant 1 B41
Chr3:13943553 ATT A 2bp_deletion frameshift_variant 3 A16,C21,C79
Chr3:13943553 ATT A 2bp_deletion CDS_variant 3 A16,C21,C79
Chr3:13943558 C CCG 2bp_insertion frameshift_variant 3 A16,C21,C79
Chr3:13943558 C CCG 2bp_insertion CDS_variant 3 A16,C21,C79
Chr3:13943572 AGC * 2bp_deletion CDS_variant 3 A1,A16,B106
Chr3:13943585 G A EMS_canonical_SNV CDS_variant 1 B109

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802226.1
924 aa
N
1
462
924
Rx_N
NB-ARC
WHD_DRP
LRR_14
C
PF18052 Rx_N 5-87 aa PF00931 NB-ARC 172-335 aa PF23559 WHD_DRP 422-499 aa PF23598 LRR_14 560-869 aa
XP_057802227.1
924 aa
N
1
462
924
Rx_N
NB-ARC
WHD_DRP
LRR_14
C
PF18052 Rx_N 5-87 aa PF00931 NB-ARC 172-335 aa PF23559 WHD_DRP 422-499 aa PF23598 LRR_14 560-869 aa
XP_057802228.1
924 aa
N
1
462
924
Rx_N
NB-ARC
WHD_DRP
LRR_14
C
PF18052 Rx_N 5-87 aa PF00931 NB-ARC 172-335 aa PF23559 WHD_DRP 422-499 aa PF23598 LRR_14 560-869 aa
XP_057802229.1
924 aa
N
1
462
924
Rx_N
NB-ARC
WHD_DRP
LRR_14
C
PF18052 Rx_N 5-87 aa PF00931 NB-ARC 172-335 aa PF23559 WHD_DRP 422-499 aa PF23598 LRR_14 560-869 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057802226.1 Pfam PF18052 Rx_N Domain 5 87 4.9e-19 68.9 Rx N-terminal domain
XP_057802226.1 Pfam PF00931 NB-ARC Domain 172 335 3.4e-36 125.1 NB-ARC domain
XP_057802226.1 Pfam PF23559 WHD_DRP Domain 422 499 6e-11 42.9 Disease resistance protein Winged helix domain
XP_057802226.1 Pfam PF23598 LRR_14 Repeat 560 869 3.4e-22 79.4 Leucine-rich repeat region
XP_057802227.1 Pfam PF18052 Rx_N Domain 5 87 4.9e-19 68.9 Rx N-terminal domain
XP_057802227.1 Pfam PF00931 NB-ARC Domain 172 335 3.4e-36 125.1 NB-ARC domain
XP_057802227.1 Pfam PF23559 WHD_DRP Domain 422 499 6e-11 42.9 Disease resistance protein Winged helix domain
XP_057802227.1 Pfam PF23598 LRR_14 Repeat 560 869 3.4e-22 79.4 Leucine-rich repeat region
XP_057802228.1 Pfam PF18052 Rx_N Domain 5 87 4.9e-19 68.9 Rx N-terminal domain
XP_057802228.1 Pfam PF00931 NB-ARC Domain 172 335 3.4e-36 125.1 NB-ARC domain
XP_057802228.1 Pfam PF23559 WHD_DRP Domain 422 499 6e-11 42.9 Disease resistance protein Winged helix domain
XP_057802228.1 Pfam PF23598 LRR_14 Repeat 560 869 3.4e-22 79.4 Leucine-rich repeat region
XP_057802229.1 Pfam PF18052 Rx_N Domain 5 87 4.9e-19 68.9 Rx N-terminal domain
XP_057802229.1 Pfam PF00931 NB-ARC Domain 172 335 3.4e-36 125.1 NB-ARC domain
XP_057802229.1 Pfam PF23559 WHD_DRP Domain 422 499 6e-11 42.9 Disease resistance protein Winged helix domain
XP_057802229.1 Pfam PF23598 LRR_14 Repeat 560 869 3.4e-22 79.4 Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA
XR_009099643.1
AATGAGGTAGAATCATTGAATAAAGAAGAAGAAGACAAGGTAGAAACAGAACAAGTGGAATTAATAAAGATTATCTGCTCTCACGCGTTTCCCCACGAACCAAACATCTCTGTTCCAGAATCCAAATTCTTCGCAATCTCGATTGAAGAATTTGTATTCACCACAACGAGTTGAGTTCCTTATCCTTATTCCTCTCTCTATATACCCTCACCAATAGTTTATCAATTTGACCAAAGATATTTGCGATGGCAGAAGCAGTG...
XR_009099642.1
AATGAGGTAGAATCATTGAATAAAGAAGAAGAAGACAAGGTAGAAACAGAACAAGTGGAATTAATAAAGATTATCTGCTCTCACGCGTTTCCCCACGAACCAAACATCTCTGTTCCAGAATCCAAATTCTTCGCAATCTCGATTGAAGAATTTGTATTCACCACAACGAGTTGAGTTCCTTATCCTTATTCCTCTCTCTATATACCCTCACCAATAGTTTATCAATTTGACCAAAGATATTTGCGATGGCAGAAGCAGTG...

CDS

4 records

下载 CDS FASTA
LOC131017493
ATGGCAGAAGCAGTGGTGTCGACTGCTCTAGAAACCTTGCGCGATTTGTTGTTGGAAGAAGCAAGGTTTTTATCTGGTGTGGGCGATGAAGTGAGGGAGCTCGAGATCCAGCTCAAAGAGATGAAGTGTCTCCTCAGAGATGCTGACAGAAGACGACATGAAAGCAGCATGATTTTGAATTGGATCTCGGAGATCAAAGATCTTGTGTACAGAGCCGAAGCTGCCATTGAAAGACACGCAGTTTATCAAGTGACTTCAAG...
LOC131017493
ATGGCAGAAGCAGTGGTGTCGACTGCTCTAGAAACCTTGCGCGATTTGTTGTTGGAAGAAGCAAGGTTTTTATCTGGTGTGGGCGATGAAGTGAGGGAGCTCGAGATCCAGCTCAAAGAGATGAAGTGTCTCCTCAGAGATGCTGACAGAAGACGACATGAAAGCAGCATGATTTTGAATTGGATCTCGGAGATCAAAGATCTTGTGTACAGAGCCGAAGCTGCCATTGAAAGACACGCAGTTTATCAAGTGACTTCAAG...

Protein

4 records

下载 Protein FASTA
XP_057802226.1
MAEAVVSTALETLRDLLLEEARFLSGVGDEVRELEIQLKEMKCLLRDADRRRHESSMILNWISEIKDLVYRAEAAIERHAVYQVTSRRRRGLTQLIRRCSCNLEEYKSIHQLGSEISPIKSRLERINKEMQDNGIKKSIINNTDEGESSFANNRARKSFPEFEIGECFVGMKDELKQLANLLRHDNEERVISVWGMGGSGKTTIAKKLYNENKTSFDLSAWVCISQQRQSFQSVWKDVLKQLEPQTSEDLSEWELKERLC...
XP_057802227.1
MAEAVVSTALETLRDLLLEEARFLSGVGDEVRELEIQLKEMKCLLRDADRRRHESSMILNWISEIKDLVYRAEAAIERHAVYQVTSRRRRGLTQLIRRCSCNLEEYKSIHQLGSEISPIKSRLERINKEMQDNGIKKSIINNTDEGESSFANNRARKSFPEFEIGECFVGMKDELKQLANLLRHDNEERVISVWGMGGSGKTTIAKKLYNENKTSFDLSAWVCISQQRQSFQSVWKDVLKQLEPQTSEDLSEWELKERLC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器