当前解析结果
SmilChr03G001222| 统一新 Gene ID | SmilChr03G001222 |
|---|---|
| 名称 | SmilChr03G001222 |
| 描述 | putative disease resistance protein At1g50180 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 14078360 - 14082633 / - |
| NCBI Gene ID | LOC131017741 |
|---|---|
| GeneID | 131017741 |
| locus_tag | - |
| NCBI Name | LOC131017741 |
| 原始查询 | SmilChr03G001222 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative disease resistance protein At1g50180 |
| 产物 | putative disease resistance protein At1g50180 |
| Arabidopsis | AT1G50180 (AT1G50180)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:841440] identity=37.9; qcov=0.986; evalue=2.17e-55; confidence=medium |
| Rice | Os11g0633500- identity=29.1; qcov=1.02; evalue=3.34e-34; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF13191 (AAA_16); PF13401 (AAA_22); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017741 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057802442.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057802442.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057802442.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057802442.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057802442.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:14078753 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C51 |
Chr3:14079861 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr3:14080355 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr3:14080530 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A9,B99 |
Chr3:14080720 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C4 |
Chr3:14080737 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B8 |
Chr3:14080872 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B7,C43 |
Chr3:14080891 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A4,C42 |
Chr3:14081503 |
C |
CA |
1bp_insertion | frameshift_variant | 10 | A6,B114,B122,B32,C1,C31,C34,C4,D3,D6 |
Chr3:14081506 |
GGC |
G |
2bp_deletion | frameshift_variant | 1 | D5 |
Chr3:14081506 |
GGC |
G |
2bp_deletion | CDS_variant | 1 | D5 |
Chr3:14081507 |
G |
GAT |
2bp_insertion | stop_gained,frameshift_variant | 10 | A6,B114,B122,B32,C1,C31,C34,C4,D3,D6 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802442.1PF18052
Rx_N 5-87 aa
PF13191
AAA_16 164-283 aa
PF00931
NB-ARC 169-343 aa
PF23559
WHD_DRP 430-507 aa
PF23598
LRR_14 570-898 aa
XP_057802443.1PF18052
Rx_N 5-87 aa
PF13191
AAA_16 164-283 aa
PF00931
NB-ARC 169-343 aa
PF13401
AAA_22 182-286 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802442.1 |
Pfam | PF18052 |
Rx_N | Domain | 5 | 87 | 7.9e-18 | 65.1 | Rx N-terminal domain |
XP_057802442.1 |
Pfam | PF13191 |
AAA_16 | Domain | 164 | 283 | 6.9e-09 | 37.2 | AAA ATPase domain |
XP_057802442.1 |
Pfam | PF00931 |
NB-ARC | Domain | 169 | 343 | 7.7e-33 | 114.2 | NB-ARC domain |
XP_057802442.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 430 | 507 | 2.8e-11 | 44.0 | Disease resistance protein Winged helix domain |
XP_057802442.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 570 | 898 | 1.2e-23 | 84.2 | Leucine-rich repeat region |
XP_057802443.1 |
Pfam | PF18052 |
Rx_N | Domain | 5 | 87 | 5.2e-18 | 65.6 | Rx N-terminal domain |
XP_057802443.1 |
Pfam | PF13191 |
AAA_16 | Domain | 164 | 283 | 9.1e-10 | 40.0 | AAA ATPase domain |
XP_057802443.1 |
Pfam | PF00931 |
NB-ARC | Domain | 169 | 343 | 1.1e-33 | 116.9 | NB-ARC domain |
XP_057802443.1 |
Pfam | PF13401 |
AAA_22 | Domain | 182 | 286 | 1.4e-06 | 29.3 | AAA domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。