当前解析结果
SmilChr03G001235| 统一新 Gene ID | SmilChr03G001235 |
|---|---|
| 名称 | SmilChr03G001235 |
| 描述 | putative disease resistance protein At1g50180 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 14266179 - 14266935 / + |
| NCBI Gene ID | LOC131017748 |
|---|---|
| GeneID | 131017748 |
| locus_tag | - |
| NCBI Name | LOC131017748 |
| 原始查询 | SmilChr03G001235 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative disease resistance protein At1g50180 |
| 产物 | putative disease resistance protein At1g50180 |
| Arabidopsis | AT1G50180 (AT1G50180)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:841440] identity=37.1; qcov=0.63; evalue=6.18e-19; confidence=low |
| Rice | Os11g0227800- identity=29.6; qcov=0.571; evalue=5.34e-06; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF18052 (Rx_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017748 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057802452.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057802452.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057802452.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057802452.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057802452.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:14266283 |
AT |
A |
1bp_deletion | frameshift_variant | 38 | A21,A3,A6,B102,B11,B12,B128,B14,B17,B33,B47,B64,B76,B84,B90,B95,C18,C28,C35,C45,C46,C48,C49,C5,C55,C58,C6,C60,C62,C63,C67,C7,C71,C79,C84,C87,D3,D9 |
Chr3:14266288 |
AG |
A |
1bp_deletion | frameshift_variant | 3 | B99,C31,D1 |
Chr3:14266288 |
AG |
A |
1bp_deletion | CDS_variant | 3 | B99,C31,D1 |
Chr3:14266290 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B128,B95 |
Chr3:14266294 |
A |
ATG |
2bp_insertion | frameshift_variant | 1 | B6 |
Chr3:14266294 |
A |
ATG |
2bp_insertion | CDS_variant | 1 | B6 |
Chr3:14266308 |
GA |
G |
1bp_deletion | frameshift_variant | 33 | A21,A3,A6,B102,B11,B12,B128,B14,B33,B47,B64,B76,B84,B90,B95,C18,C28,C35,C45,C46,C48,C5,C55,C60,C62,C63,C7,C71,C79,C84,C87,D3,D9 |
Chr3:14266348 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr3:14266366 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B6 |
Chr3:14266385 |
GAT |
G |
2bp_deletion | frameshift_variant | 1 | B6 |
Chr3:14266385 |
GAT |
G |
2bp_deletion | CDS_variant | 1 | B6 |
Chr3:14266388 |
CA |
C |
1bp_deletion | frameshift_variant | 1 | B6 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057802452.1PF18052
Rx_N 1-51 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802452.1 |
Pfam | PF18052 |
Rx_N | Domain | 1 | 51 | 2.2e-11 | 44.4 | Rx N-terminal domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。