当前解析结果
SmilChr03G001248| 统一新 Gene ID | SmilChr03G001248 |
|---|---|
| 名称 | SmilChr03G001248 |
| 描述 | probable disease resistance protein At1g58602 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 14377951 - 14385049 / + |
| NCBI Gene ID | LOC131017759 |
|---|---|
| GeneID | 131017759 |
| locus_tag | - |
| NCBI Name | LOC131017759 |
| 原始查询 | SmilChr03G001248 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable disease resistance protein At1g58602 |
| 产物 | probable disease resistance protein At1g58602 |
| Arabidopsis | AT1G58390 (AT1G58390)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:842208] identity=33.3; qcov=1.04; evalue=1.95e-127; confidence=low |
| Rice | Os07g0186500- identity=28.7; qcov=1.03; evalue=5.37e-78; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF13191 (AAA_16); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017759 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057802453.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057802453.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057802453.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057802453.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057802453.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:14378156 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B20,C33 |
Chr3:14378158 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B20,C33 |
Chr3:14378163 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
Chr3:14378217 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C58,C85 |
Chr3:14378223 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C58,C85 |
Chr3:14378224 |
C |
T |
EMS_canonical_SNV | stop_gained | 6 | B11,B140,B5,B57,B90,B92 |
Chr3:14378233 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
Chr3:14378243 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A4,C83 |
Chr3:14378247 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A13,B8,C18,C33,C53 |
Chr3:14378269 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | B110,C55 |
Chr3:14378269 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B110,C55 |
Chr3:14378270 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C45 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802453.1PF18052
Rx_N 5-87 aa
PF13191
AAA_16 164-286 aa
PF00931
NB-ARC 168-345 aa
PF23559
WHD_DRP 434-513 aa
PF23598
LRR_14 574-886 aa
XP_057802455.1PF18052
Rx_N 5-87 aa
PF13191
AAA_16 164-286 aa
PF00931
NB-ARC 168-345 aa
PF23559
WHD_DRP 434-513 aa
PF23598
LRR_14 574-886 aa
XP_057802456.1PF18052
Rx_N 5-87 aa
PF13191
AAA_16 164-286 aa
PF00931
NB-ARC 168-345 aa
PF23559
WHD_DRP 434-513 aa
PF23598
LRR_14 573-858 aa
XP_057802457.1PF18052
Rx_N 5-87 aa
PF13191
AAA_16 164-286 aa
PF00931
NB-ARC 168-345 aa
PF23559
WHD_DRP 434-513 aa
PF23598
LRR_14 573-858 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802453.1 |
Pfam | PF18052 |
Rx_N | Domain | 5 | 87 | 2.2e-18 | 66.9 | Rx N-terminal domain |
XP_057802453.1 |
Pfam | PF13191 |
AAA_16 | Domain | 164 | 286 | 1.1e-08 | 36.5 | AAA ATPase domain |
XP_057802453.1 |
Pfam | PF00931 |
NB-ARC | Domain | 168 | 345 | 2.2e-34 | 119.2 | NB-ARC domain |
XP_057802453.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 434 | 513 | 2.3e-11 | 44.3 | Disease resistance protein Winged helix domain |
XP_057802453.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 574 | 886 | 2e-27 | 96.6 | Leucine-rich repeat region |
XP_057802455.1 |
Pfam | PF18052 |
Rx_N | Domain | 5 | 87 | 2.2e-18 | 66.9 | Rx N-terminal domain |
XP_057802455.1 |
Pfam | PF13191 |
AAA_16 | Domain | 164 | 286 | 1.1e-08 | 36.5 | AAA ATPase domain |
XP_057802455.1 |
Pfam | PF00931 |
NB-ARC | Domain | 168 | 345 | 2.2e-34 | 119.2 | NB-ARC domain |
XP_057802455.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 434 | 513 | 2.3e-11 | 44.3 | Disease resistance protein Winged helix domain |
XP_057802455.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 574 | 886 | 2e-27 | 96.6 | Leucine-rich repeat region |
XP_057802456.1 |
Pfam | PF18052 |
Rx_N | Domain | 5 | 87 | 2e-18 | 67.0 | Rx N-terminal domain |
XP_057802456.1 |
Pfam | PF13191 |
AAA_16 | Domain | 164 | 286 | 1e-08 | 36.6 | AAA ATPase domain |
XP_057802456.1 |
Pfam | PF00931 |
NB-ARC | Domain | 168 | 345 | 2e-34 | 119.3 | NB-ARC domain |
XP_057802456.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 434 | 513 | 1.4e-11 | 45.0 | Disease resistance protein Winged helix domain |
XP_057802456.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 573 | 858 | 1.1e-25 | 90.9 | Leucine-rich repeat region |
XP_057802457.1 |
Pfam | PF18052 |
Rx_N | Domain | 5 | 87 | 2e-18 | 67.0 | Rx N-terminal domain |
XP_057802457.1 |
Pfam | PF13191 |
AAA_16 | Domain | 164 | 286 | 1e-08 | 36.6 | AAA ATPase domain |
XP_057802457.1 |
Pfam | PF00931 |
NB-ARC | Domain | 168 | 345 | 2e-34 | 119.3 | NB-ARC domain |
XP_057802457.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 434 | 513 | 1.4e-11 | 45.0 | Disease resistance protein Winged helix domain |
XP_057802457.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 573 | 858 | 1.1e-25 | 90.9 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。