Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001250`

染色体: Chr03 坐标: 14414706-14416735 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001250`
名称	SmilChr03G001250
描述	pentatricopeptide repeat-containing protein At1g31920
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	14414706 - 14416735 / `+`

ID 对照

NCBI Gene ID	`LOC131017761`
GeneID	`131017761`
locus_tag	`-`
NCBI Name	`LOC131017761`
原始查询	`SmilChr03G001250`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At1g31920
产物	pentatricopeptide repeat-containing protein At1g31920
Arabidopsis	`AT1G31920` (AT1G31920) Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840082] identity=54; qcov=0.985; evalue=0; confidence=high
Rice	`Os03g0821700` (OJ1754_E06.32) - identity=39.7; qcov=0.964; evalue=4.87e-145; confidence=medium
GO	GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0008270 (zinc ion binding); GO:0009451 (RNA modification)
KEGG	-
Pfam	PF01535 (PPR); PF13041 (PPR_2); PF14432 (DYW_deaminase); PF20431 (E_motif)
InterPro	-
eggNOG	-
NR	GeneID:131017761

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057802459.1`
2	Chloroplast	叶绿体	0.20000	`XP_057802459.1`
3	Nucleus	细胞核	0.00000	`XP_057802459.1`
4	Chromosome	染色体	0.00000	`XP_057802459.1`
5	Centromere	着丝粒	0.00000	`XP_057802459.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:14414992`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B123
`Chr3:14415166`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A16,C64,C66,C78
`Chr3:14415167`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A22,C27
`Chr3:14415238`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B13,B33
`Chr3:14415265`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B40,B61
`Chr3:14415315`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B118,B41,B44,B49
`Chr3:14415332`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C53
`Chr3:14415440`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A5
`Chr3:14415475`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B127
`Chr3:14415642`	`G`	`A`	EMS_canonical_SNV	stop_gained	4	B100,B125,B27,B45
`Chr3:14415642`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B100,B125,B27,B45
`Chr3:14415644`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B19,B78

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802459.1

611 aa

306

611

PPR_2

PPR

E_motif

DYW_deaminase

PF13041 PPR_2 98-146 aa PF01535 PPR 103-130 aa PF01535 PPR 174-199 aa PF01535 PPR 203-231 aa PF01535 PPR 276-302 aa PF01535 PPR 305-334 aa PF01535 PPR 341-367 aa PF01535 PPR 377-401 aa PF20431 E_motif 419-479 aa PF14432 DYW_deaminase 519-611 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802459.1`	Pfam	`PF13041`	PPR_2	Repeat	98	146	2.8e-34	117.7	PPR repeat family
`XP_057802459.1`	Pfam	`PF01535`	PPR	Repeat	103	130	9.1e-36	120.3	PPR repeat
`XP_057802459.1`	Pfam	`PF01535`	PPR	Repeat	174	199	9.1e-36	120.3	PPR repeat
`XP_057802459.1`	Pfam	`PF01535`	PPR	Repeat	203	231	9.1e-36	120.3	PPR repeat
`XP_057802459.1`	Pfam	`PF01535`	PPR	Repeat	276	302	9.1e-36	120.3	PPR repeat
`XP_057802459.1`	Pfam	`PF01535`	PPR	Repeat	305	334	9.1e-36	120.3	PPR repeat
`XP_057802459.1`	Pfam	`PF01535`	PPR	Repeat	341	367	9.1e-36	120.3	PPR repeat
`XP_057802459.1`	Pfam	`PF01535`	PPR	Repeat	377	401	9.1e-36	120.3	PPR repeat
`XP_057802459.1`	Pfam	`PF20431`	E_motif	Repeat	419	479	8.3e-12	45.9	E motif
`XP_057802459.1`	Pfam	`PF14432`	DYW_deaminase	Domain	519	611	4.1e-36	123.4	DYW family of nucleic acid deaminases

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057946476.1
CCATATGACATGGAAATTTTTCTGGCTGAAATCCCAATTCCAAATTCTTGGATCACATTCAACAAAGAACATCAAAGTTGTGGGAATTCAAGAAAACAAAATTCCACCAATTTCCTTTTAATCACACACTGAAAAACCTCATTAAATGAATTCCAGAAGTTGCAAGTGATGACATGATTGCATCATACTTGCCGAGTCAGCCCCAGCAATTCTTGATACAACACCAGAATCATGCAAAGATCCCAGAAACCGATCATTAT...

CDS

1 records

下载 CDS FASTA

LOC131017761
ATGATTGCATCATACTTGCCGAGTCAGCCCCAGCAATTCTTGATACAACACCAGAATCATGCAAAGATCCCAGAAACCGATCATTATTCAAATCAAAAGGAGCAAGAATGCATCTCCATGATCAAGAAATGCAAGAATTTGGAGGAATTCAAGCAGATCCATGGCCAAATCCTCAAGTTTGGACTGCTGTGGAGCAGTTCATTCTGCGCCAGCAATCTCATCTCATCTTGTGCTCTATCACAATGGGGAAGCATGGACTA...

Protein

1 records

下载 Protein FASTA

XP_057802459.1
MIASYLPSQPQQFLIQHQNHAKIPETDHYSNQKEQECISMIKKCKNLEEFKQIHGQILKFGLLWSSSFCASNLISSCALSQWGSMDYACSIFDQIDHPCSFDFNTMIRGYIKDMSSEQALLAYLDMLETGVGPDKFTYPALLKACASLSAAEEGMQIHCHVLKHGFIGDVFVGNSLINMYGKCGLLRDSCSVFEQMEEKTVASWSAVIAAHASLGMWGECVKLFSCMICDGGWRPEESVLVSVLSACTHLGRLDWGRCIH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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