当前解析结果
SmilChr03G001254| 统一新 Gene ID | SmilChr03G001254 |
|---|---|
| 名称 | SmilChr03G001254 |
| 描述 | cellulose synthase-like protein G3 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 14461786 - 14468843 / - |
| NCBI Gene ID | LOC131017764 |
|---|---|
| GeneID | 131017764 |
| locus_tag | - |
| NCBI Name | LOC131017764 |
| 原始查询 | SmilChr03G001254 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cellulose synthase-like protein G3 |
| 产物 | cellulose synthase-like protein G3 |
| Arabidopsis | AT4G23990 (CSLG3)cellulose synthase like G3 [Source:NCBI gene (formerly Entrezgene);Acc:828499] identity=58.2; qcov=0.943; evalue=0; confidence=high |
| Rice | Os09g0478300 (OsCslE6)- identity=37.9; qcov=0.991; evalue=3.25e-126; confidence=medium |
| GO | GO:0005802 (trans-Golgi network); GO:0005886 (plasma membrane); GO:0009833 (plant-type primary cell wall biogenesis); GO:0016760 (cellulose synthase (UDP-forming) activity); GO:0030244 (cellulose biosynthetic process); GO:0051753 (mannan synthase activity) |
| KEGG | - |
| Pfam | PF03552 (Cellulose_synt); PF13632 (Glyco_trans_2_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017764 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.60000 | XP_057802465.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.60000 | XP_057802466.1 |
| 3 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057802465.1 |
| 4 | Golgi apparatus | 高尔基体 | 0.20000 | XP_057802465.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057802465.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:14462004 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C21,C4 |
Chr3:14462123 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A22,C27 |
Chr3:14462157 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C58,C85 |
Chr3:14462290 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B38,B39 |
Chr3:14462409 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A18,C53 |
Chr3:14462457 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B111 |
Chr3:14463122 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B24,C24 |
Chr3:14463240 |
A |
AT |
1bp_insertion | frameshift_variant | 1 | C78 |
Chr3:14463240 |
A |
AT |
1bp_insertion | CDS_variant | 1 | C78 |
Chr3:14463244 |
A |
AC |
1bp_insertion | frameshift_variant | 1 | C78 |
Chr3:14463244 |
A |
AC |
1bp_insertion | CDS_variant | 1 | C78 |
Chr3:14463366 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B19,B78 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802465.1PF03552
Cellulose_synt 103-391 aa
PF13632
Glyco_trans_2_3 302-548 aa
PF03552
Cellulose_synt 410-728 aa
XP_057802466.1PF03552
Cellulose_synt 103-391 aa
PF13632
Glyco_trans_2_3 302-548 aa
PF03552
Cellulose_synt 410-561 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802465.1 |
Pfam | PF03552 |
Cellulose_synt | Domain | 103 | 391 | 7.1e-131 | 438.8 | Cellulose synthase |
XP_057802465.1 |
Pfam | PF13632 |
Glyco_trans_2_3 | Domain | 302 | 548 | 1.6e-08 | 35.3 | Glycosyl transferase family group 2 |
XP_057802465.1 |
Pfam | PF03552 |
Cellulose_synt | Domain | 410 | 728 | 7.1e-131 | 438.8 | Cellulose synthase |
XP_057802466.1 |
Pfam | PF03552 |
Cellulose_synt | Domain | 103 | 391 | 3.1e-117 | 393.7 | Cellulose synthase |
XP_057802466.1 |
Pfam | PF13632 |
Glyco_trans_2_3 | Domain | 302 | 548 | 1e-08 | 35.9 | Glycosyl transferase family group 2 |
XP_057802466.1 |
Pfam | PF03552 |
Cellulose_synt | Domain | 410 | 561 | 3.1e-117 | 393.7 | Cellulose synthase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。