当前解析结果
SmilChr03G001259| 统一新 Gene ID | SmilChr03G001259 |
|---|---|
| 名称 | SmilChr03G001259 |
| 描述 | uncharacterized protein At1g10890-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 14532130 - 14536847 / + |
| NCBI Gene ID | LOC131017770 |
|---|---|
| GeneID | 131017770 |
| locus_tag | - |
| NCBI Name | LOC131017770 |
| 原始查询 | SmilChr03G001259 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | arginine/glutamate-rich 1 protein [Source:NCBI gene (formerly Entrezgene);Acc:837632]; symbol=AT1G10890; hit=AT1G10890; species=arabidopsis; confidence=high |
| 产物 | arginine/glutamate-rich 1 protein [Source:NCBI gene (formerly Entrezgene);Acc:837632]; symbol=AT1G10890; hit=AT1G10890; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G10890 (AT1G10890)arginine/glutamate-rich 1 protein [Source:NCBI gene (formerly Entrezgene);Acc:837632] identity=65.8; qcov=0.88; evalue=1.45e-51; confidence=high |
| Rice | Os11g0544200- identity=60.8; qcov=0.556; evalue=1e-38; confidence=medium |
| GO | GO:0005654 (nucleoplasm); GO:0005739 (mitochondrion); GO:0045296 (cadherin binding) |
| KEGG | - |
| Pfam | PF15346 (ARGLU) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017770 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057802472.1 |
| 2 | Nucleoplasm | 核质 | 1.00000 | XP_057802472.1 |
| 3 | Nuclear speckle | 核斑点 | 0.80000 | XP_057802472.1 |
| 4 | Chromatin | 染色质 | 0.20000 | XP_057802472.1 |
| 5 | Nuclear body | 核内小体 | 0.20000 | XP_057802472.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:14532747 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B102,B41,C10,C74 |
Chr3:14533961 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B54,B86 |
Chr3:14534006 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr3:14534010 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C24,C78,D7 |
Chr3:14534108 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B6 |
Chr3:14535803 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr3:14535804 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A18,C45 |
Chr3:14535893 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
Chr3:14535916 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B140,C21,C4,C55,D8 |
Chr3:14535929 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C55,D8 |
Chr3:14536596 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B111,B69 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057802472.1PF15346
ARGLU 108-263 aa
XP_057802473.1PF15346
ARGLU 108-263 aa
XP_057802475.1PF15346
ARGLU 108-263 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802472.1 |
Pfam | PF15346 |
ARGLU | Coiled-coil | 108 | 263 | 5.1e-40 | 137.5 | Arginine and glutamate-rich 1 |
XP_057802473.1 |
Pfam | PF15346 |
ARGLU | Coiled-coil | 108 | 263 | 5.1e-40 | 137.5 | Arginine and glutamate-rich 1 |
XP_057802475.1 |
Pfam | PF15346 |
ARGLU | Coiled-coil | 108 | 263 | 5.1e-40 | 137.5 | Arginine and glutamate-rich 1 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。