Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001261`

染色体: Chr03 坐标: 14545865-14555932 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001261`
名称	SmilChr03G001261
描述	phosphatidylinositol 4-phosphate 5-kinase 8-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	14545865 - 14555932 / `-`

ID 对照

NCBI Gene ID	`LOC131017771`
GeneID	`131017771`
locus_tag	`-`
NCBI Name	`LOC131017771`
原始查询	`SmilChr03G001261`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	phosphatidylinositol 4-phosphate 5-kinase 8-like
产物	phosphatidylinositol 4-phosphate 5-kinase 8-like
Arabidopsis	`AT1G60890` (AT1G60890) Phosphatidylinositol-4-phosphate 5-kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:842381] identity=64.2; qcov=1; evalue=0; confidence=high
Rice	`Os03g0701800` (OsPIPK1) - identity=54.5; qcov=0.996; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0016308 (1-phosphatidylinositol-4-phosphate 5-kinase activity); GO:0046488 (phosphatidylinositol metabolic process)
KEGG	smil00562 (Inositol phosphate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04070 (Phosphatidylinositol signaling system - Salvia miltiorrhiza (redroot sage)); smil04144 (Endocytosis - Salvia miltiorrhiza (redroot sage))
Pfam	PF01504 (PIP5K); PF02493 (MORN)
InterPro	-
eggNOG	-
NR	GeneID:131017771

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057802476.1`
2	Cytosol	细胞质基质	0.60000	`XP_057802476.1`
3	Cell projection	细胞突起	0.60000	`XP_057802476.1`
4	Cilium	纤毛	0.40000	`XP_057802476.1`
5	Cell membrane	细胞膜	0.20000	`XP_057802476.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:14546010`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B12,B68,D2
`Chr3:14547376`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B13,B33,C85,D11
`Chr3:14551001`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C58,C85
`Chr3:14553547`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C23
`Chr3:14553641`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A18,B3,B44,C86
`Chr3:14553745`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A18,B3,B44,C86
`Chr3:14554070`	`TC`	`T`	1bp_deletion	frameshift_variant	3	C10,C21,C72
`Chr3:14554070`	`TC`	`T`	1bp_deletion	CDS_variant	3	C10,C21,C72
`Chr3:14554474`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A7,B20
`Chr3:14554490`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B12,B68,D2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802476.1

772 aa

386

772

MORN

PIP5K

PF02493 MORN 18-39 aa PF02493 MORN 41-60 aa PF02493 MORN 64-86 aa PF02493 MORN 87-108 aa PF02493 MORN 110-130 aa PF02493 MORN 133-154 aa PF02493 MORN 156-177 aa PF02493 MORN 179-199 aa PF01504 PIP5K 434-767 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802476.1`	Pfam	`PF02493`	MORN	Repeat	18	39	1.6e-34	116.4	MORN repeat
`XP_057802476.1`	Pfam	`PF02493`	MORN	Repeat	41	60	1.6e-34	116.4	MORN repeat
`XP_057802476.1`	Pfam	`PF02493`	MORN	Repeat	64	86	1.6e-34	116.4	MORN repeat
`XP_057802476.1`	Pfam	`PF02493`	MORN	Repeat	87	108	1.6e-34	116.4	MORN repeat
`XP_057802476.1`	Pfam	`PF02493`	MORN	Repeat	110	130	1.6e-34	116.4	MORN repeat
`XP_057802476.1`	Pfam	`PF02493`	MORN	Repeat	133	154	1.6e-34	116.4	MORN repeat
`XP_057802476.1`	Pfam	`PF02493`	MORN	Repeat	156	177	1.6e-34	116.4	MORN repeat
`XP_057802476.1`	Pfam	`PF02493`	MORN	Repeat	179	199	1.6e-34	116.4	MORN repeat
`XP_057802476.1`	Pfam	`PF01504`	PIP5K	Family	434	767	1.5e-96	323.8	Phosphatidylinositol-4-phosphate 5-Kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057946493.1
GATGAATTGCGGCTACAACCCTAATTTCTACTCCAGCGCCGCTCTTCTTCTTCATTCTGTTTTTGCATTTTGTTTTCTTTCATCTTCTTCCACCGCCTCCTGCTCCGGCGAAGGGCGCCGCCCTCAGCCACCGCCACCACCACCACCGTCATCTCCCCCCTCTTGCCTCTCGCTCCTTGGCATTCCCCCTTCTATCATTCACCGCGAACGGCGAGGTTGCTCCATCTCCACACCGTCGCCACAATCACCATCTCCCCGCC...

CDS

1 records

下载 CDS FASTA

LOC131017771
ATGGAAAATGAGGAGAGGGGCTCTGAAAAGGTATTTTCGAATGGAGATGTCTATCGTGGTGCTTTTAAGGGAATGATTCCCCATGGAAAAGGTAAGTATACATGGTTAGATGGAACCATTTATGAAGGTGACTGGGAAGAAGGAAAGATGGCAGGGAAAGGGAAGATCCGTTGGTCCTCACAGGCTATATATGAGGGTGATTTTTCTGGAGGTTATCTTCATGGTTTTGGAACTTTTATTGGTTGCGATGGTTCCACGTA...

Protein

1 records

下载 Protein FASTA

XP_057802476.1
MENEERGSEKVFSNGDVYRGAFKGMIPHGKGKYTWLDGTIYEGDWEEGKMAGKGKIRWSSQAIYEGDFSGGYLHGFGTFIGCDGSTYRGSWKMNSQHGIGRKQYSNSDIYDGCWREGVREGSGRYAWSNDNIYIGNWKNGRMSGRGLMKWFNGDLFDGFWLNGLRDGSGCYRFSDGSYYFGTWSKGLKDGSGTFYPAGNKHLSKLNLERHKDKRNKLLSQLSSDHLDESMIPSVKRSLSDKISSSFRKGSGGLSYKTTLL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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