Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001263`

染色体: Chr03 坐标: 14598107-14601107 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001263`
名称	SmilChr03G001263
描述	probable phosphopantothenoylcysteine decarboxylase
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	14598107 - 14601107 / `-`

ID 对照

NCBI Gene ID	`LOC131017772`
GeneID	`131017772`
locus_tag	`-`
NCBI Name	`LOC131017772`
原始查询	`SmilChr03G001263`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable phosphopantothenoylcysteine decarboxylase
产物	probable phosphopantothenoylcysteine decarboxylase
Arabidopsis	`AT3G18030` (HAL3A) HAL3-like protein A [Source:NCBI gene (formerly Entrezgene);Acc:821327] identity=78.7; qcov=0.934; evalue=8.8e-123; confidence=high
Rice	`Os06g0199500` (OsHAL3) - identity=83.6; qcov=0.839; evalue=5.93e-112; confidence=high
GO	GO:0004633 (phosphopantothenoylcysteine decarboxylase activity); GO:0010181 (FMN binding); GO:0015937 (coenzyme A biosynthetic process); GO:0071513 (phosphopantothenoylcysteine decarboxylase complex)
KEGG	smil00770 (Pantothenate and CoA biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage))
Pfam	PF02441 (Flavoprotein)
InterPro	-
eggNOG	-
NR	GeneID:131017772

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057802477.1`
2	Cytoplasm	细胞质	1.00000	`XP_057802477.1`
3	Chromosome	染色体	0.00000	`XP_057802477.1`
4	Centromere	着丝粒	0.00000	`XP_057802477.1`
5	Chromatin	染色质	0.00000	`XP_057802477.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:14598510`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B134,B58,C63,D4
`Chr3:14598658`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B140,B90
`Chr3:14599428`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B12,B140,D2
`Chr3:14599458`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr3:14599469`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B19
`Chr3:14599532`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B123
`Chr3:14599598`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B69

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802477.1

211 aa

106

211

Flavoprotein

PF02441 Flavoprotein 18-196 aa

XP_057802478.1

211 aa

106

211

Flavoprotein

PF02441 Flavoprotein 18-196 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802477.1`	Pfam	`PF02441`	Flavoprotein	Domain	18	196	7.8e-53	179.8	Flavoprotein
`XP_057802478.1`	Pfam	`PF02441`	Flavoprotein	Domain	18	196	7.8e-53	179.8	Flavoprotein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XR_009099855.1
ATACTAAAGTTAGGTAAAAAATATTGAGCGGGCAACTAAGATACAAACCACTGAGAAGTCGGAAACAGAATTCTTGCTCTCTGCTCTCGCGCCAGATCAGTCGCTGCCGCCGCCGCCTGCCGGTCGTACAGCCTCCACCCTCCATCGGCGCCCACTCGCATCGCCGTCTCTTACACGACTTCAGATATGGCACATGTAGAACCTGAGAATATGGAGATGAACTTGTATCAAGTGAATAGTGCTGTGAGGAGACCTCGTAT...

XM_057946494.1
GGTAAAAAATATTGAGCGGGCAACTAAGATACAAACCACTGAGAAGTCGGAAACAGAATTCTTGCTCTCTGCTCTCGCGCCAGATCAGTCGCTGCCGCCGCCGCCTGCCGGTCGTACAGCCTCCACCCTCCATCGGCGCCCACTCGCATCGCCGTCTCTTACACGACTTCAGATATGGCACATGTAGAACCTGAGAATATGGAGATGAACTTGTATCAAGTGAATAGTGCTGTGAGGAGACCTCGTATCCTGCTCGCTGC...

CDS

2 records

下载 CDS FASTA

LOC131017772
ATGGCACATGTAGAACCTGAGAATATGGAGATGAACTTGTATCAAGTGAATAGTGCTGTGAGGAGACCTCGTATCCTGCTCGCTGCCAGTGGAAGTGTGGCTGCAATAAAATTTGCTAATCTTTGTCATTGTTTCTCCGAGTGGGCGGAAGTGAAAGCTGTTGCTACCCAGGCATCTCTCCATTTCGTAGACAGGATAGCTCTTCCCAAGGATGTAATACTTTACACTGATGAGGATGAATGGTCGAGTTGGAAAAAAAT...

Protein

2 records

下载 Protein FASTA

XP_057802477.1
MAHVEPENMEMNLYQVNSAVRRPRILLAASGSVAAIKFANLCHCFSEWAEVKAVATQASLHFVDRIALPKDVILYTDEDEWSSWKKIGDNVLHIELRKWADIMVIAPLSANTLAKIAGGLCDNLLTCIVRAWDYSKPMFVAPAMNTLMWNNPFTERHLMGIDDLGISLIPPVKKRLACGDYGNGAMAEPSLIYSTVRLFFETREQSSGGNV

XP_057802478.1
MAHVEPENMEMNLYQVNSAVRRPRILLAASGSVAAIKFANLCHCFSEWAEVKAVATQASLHFVDRIALPKDVILYTDEDEWSSWKKIGDNVLHIELRKWADIMVIAPLSANTLAKIAGGLCDNLLTCIVRAWDYSKPMFVAPAMNTLMWNNPFTERHLMGIDDLGISLIPPVKKRLACGDYGNGAMAEPSLIYSTVRLFFETREQSSGGNV

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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