Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001266`

染色体: Chr03 坐标: 14668002-14674027 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001266`
名称	SmilChr03G001266
描述	3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	14668002 - 14674027 / `-`

ID 对照

NCBI Gene ID	`LOC131017775`
GeneID	`131017775`
locus_tag	`-`
NCBI Name	`LOC131017775`
原始查询	`SmilChr03G001266`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic-like
产物	3-oxoacyl-[acyl-carrier-protein] synthase I%2C chloroplastic-like
Arabidopsis	`AT5G46290` (KASI) 3-ketoacyl-acyl carrier protein synthase I [Source:NCBI gene (formerly Entrezgene);Acc:834671] identity=76.5; qcov=0.871; evalue=0; confidence=high
Rice	`Os06g0196600` (OsKASI) - identity=76.2; qcov=0.861; evalue=0; confidence=high
GO	GO:0004315 (3-oxoacyl-[acyl-carrier-protein] synthase activity); GO:0006633 (fatty acid biosynthetic process)
KEGG	smil00061 (Fatty acid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00780 (Biotin metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01212 (Fatty acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage))
Pfam	PF00109 (ketoacyl-synt); PF02801 (Ketoacyl-synt_C)
InterPro	-
eggNOG	-
NR	GeneID:131017775

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057802480.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057802480.1`
3	Nucleus	细胞核	0.00000	`XP_057802480.1`
4	Chromosome	染色体	0.00000	`XP_057802480.1`
5	Centromere	着丝粒	0.00000	`XP_057802480.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:14669088`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B118,B12,B40,D2
`Chr3:14669208`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B104,B107,B75,C71
`Chr3:14670040`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr3:14670060`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C21,C4,D11
`Chr3:14670123`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C8,C87
`Chr3:14670918`	`CCA`	`C`	2bp_deletion	frameshift_variant	3	A5,B54,B62
`Chr3:14670927`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A5,B54,B62
`Chr3:14671021`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C56
`Chr3:14671189`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D1
`Chr3:14671234`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C13
`Chr3:14672089`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B94
`Chr3:14672120`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B69

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802480.1

488 aa

244

488

ketoacyl-synt

Ketoacyl-synt_C

PF00109 ketoacyl-synt 76-322 aa PF02801 Ketoacyl-synt_C 331-443 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802480.1`	Pfam	`PF00109`	ketoacyl-synt	Domain	76	322	6.5e-55	187.2	Beta-ketoacyl synthase, N-terminal domain
`XP_057802480.1`	Pfam	`PF02801`	Ketoacyl-synt_C	Domain	331	443	2.6e-32	112.0	Beta-ketoacyl synthase, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057946497.1
CGCTGAGAAGGATTATATACATTAATAAATGAAAATCCCTGAGATTAAGGATTTATGTAATTTGCAAAGTACATACAAATTTCTTCCAACGAGCTCTGTATCGATCGTCATAGTTGTTCAGTAGCAAAGCCGCATCATCGGCGGAGCCTCCAACTCCAAAAATTCCCAAATCCAAGAAAAACCCTCTTCGTTAATTCCATCAACTCTTGTTGTTTTCTTGTTTCTCAAATCTCTATCTGTTTCCCTTTCTTATATAATAA...

CDS

1 records

下载 CDS FASTA

LOC131017775
ATGGGCAGCAGCATTGCTTTTGCATCATCTTCTCCTGGTTTGGTCTTCAACAACACCAAAGAGATCATAAATGGGGCCTCATTGTTTCACTACAACGCCCTTAAACCACTCCAAACTAACCGCTTTGAGCCCAACGGATTCGCATCCACTTCTGTGAAATGCAAGAGAATAAGGGCGATGGGAGGTCCAACAGTTTCATCTCCAAAGAGAGAAACAGATCCTAAGAAGAGGATTGTGATCACAGGAATGGGGCTTGTCTC...

Protein

1 records

下载 Protein FASTA

XP_057802480.1
MGSSIAFASSSPGLVFNNTKEIINGASLFHYNALKPLQTNRFEPNGFASTSVKCKRIRAMGGPTVSSPKRETDPKKRIVITGMGLVSVFGSDIDTFYNKLLDGVSGITPIDRFDASEYSVRFAGQIRDFSSKGYIDGKNDRRLDDCWRYCLVAGRRALDDASLPKPLLDTMDKTRIGVLVGSGMGGITAFSSGVEALVQKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFFSAANHIRRGDADI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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