Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001280`

染色体: Chr03 坐标: 14981267-14985183 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001280`
名称	SmilChr03G001280
描述	F-box protein SKIP8
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	14981267 - 14985183 / `-`

ID 对照

NCBI Gene ID	`LOC131017786`
GeneID	`131017786`
locus_tag	`-`
NCBI Name	`LOC131017786`
原始查询	`SmilChr03G001280`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box protein SKIP8
产物	F-box protein SKIP8
Arabidopsis	`AT4G10925` (AT4G10925) Nuclear transport factor 2 (NTF2) family protein [Source:NCBI gene (formerly Entrezgene);Acc:826691] identity=71.5; qcov=0.696; evalue=1.06e-72; confidence=high
Rice	`Os01g0550200` (OsFbox016) - identity=79; qcov=0.551; evalue=2.33e-63; confidence=medium
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF12937 (F-box-like); PF13474 (SnoaL_3)
InterPro	-
eggNOG	-
NR	GeneID:131017786

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.80000	`XP_057802492.1`
2	Endoplasmic reticulum membrane	内质网膜	0.40000	`XP_057802492.1`
3	Lipid droplet	脂滴	0.20000	`XP_057802492.1`
4	Chloroplast membrane	叶绿体膜	0.20000	`XP_057802493.1`
5	Nucleus	细胞核	0.00000	`XP_057802492.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:14981510`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B65,C18,C2
`Chr3:14981540`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B130,B32,C23,C49
`Chr3:14981561`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B94,D11
`Chr3:14981563`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C44
`Chr3:14984263`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B54,B86,B97
`Chr3:14984434`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B54,B86,B97
`Chr3:14984469`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B130,B32,C23,C49
`Chr3:14984501`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A22,C27
`Chr3:14984522`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B118,B41
`Chr3:14984569`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B69,C38

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802492.1

278 aa

139

278

F-box

F-box-like

SnoaL_3

PF00646 F-box 83-122 aa PF12937 F-box-like 86-126 aa PF13474 SnoaL_3 152-265 aa

XP_057802493.1

207 aa

104

207

F-box

F-box-like

PF00646 F-box 83-122 aa PF12937 F-box-like 86-126 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802492.1`	Pfam	`PF00646`	F-box	Domain	83	122	0.00014	22.3	F-box domain
`XP_057802492.1`	Pfam	`PF12937`	F-box-like	Domain	86	126	3.6e-06	27.3	F-box-like
`XP_057802492.1`	Pfam	`PF13474`	SnoaL_3	Domain	152	265	1.7e-24	87.1	SnoaL-like domain
`XP_057802493.1`	Pfam	`PF00646`	F-box	Domain	83	122	9.1e-05	22.9	F-box domain
`XP_057802493.1`	Pfam	`PF12937`	F-box-like	Domain	86	126	2.4e-06	27.9	F-box-like

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057946510.1
TTACAGCTCTGCACTAAAAAAAAGGGAAATGGTAACTGCAATATTGAAGAATTACTATTCAACCCGCAAGACAATTTATATATTAGACTATAATAATAATAATAATAATAATAATAATAGAGGTGTGTTTTGTTTGTTTAGTTGCGAAATTACGAAAATAGGCATGAATTGGCGTCGTATTTGCGTTGAGGCTTAGGCTCGATTTGCTCCAGTTTCCCACCTCACCTAGAAAATGGATTCAGTTCCAAAACCATCAATAT...

XM_057946509.1
TTACAGCTCTGCACTAAAAAAAAGGGAAATGGTAACTGCAATATTGAAGAATTACTATTCAACCCGCAAGACAATTTATATATTAGACTATAATAATAATAATAATAATAATAATAATAGAGGTGTGTTTTGTTTGTTTAGTTGCGAAATTACGAAAATAGGCATGAATTGGCGTCGTATTTGCGTTGAGGCTTAGGCTCGATTTGCTCCAGTTTCCCACCTCACCTAGAAAATGGATTCAGTTCCAAAACCATCAATAT...

CDS

2 records

下载 CDS FASTA

LOC131017786
ATGGATTTTGCGGTTTTTGCGGCCGATTATCCCTCGTTTCTGGTAGCCCTAGCAGCAACTATTTTCTGTTTGATTCTCGCGAGCGCTGTGATTTTCCGGAGACTCAAGTTCGGACTGAGCCGTTCCGATTGCGCGAGCACGACTGAGGGGAGGGGAATTGGCGCTGGGGAAATGACTGCGCGGCTGACTGAGAATGGTGGGGAGAAGGCGGCGGTAGAGAGGCAGTCGGGGGCGTCGATGATGGAGCAGCTGGTGCCTGA...

Protein

2 records

下载 Protein FASTA

XP_057802492.1
MDFAVFAADYPSFLVALAATIFCLILASAVIFRRLKFGLSRSDCASTTEGRGIGAGEMTARLTENGGEKAAVERQSGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDNVTPSNGWKAYYAATRAVVTVNAEFFRIIRERMLQAMRQFWLHADYVKCFHATGESFSGYNAVMGSWQLAFTWENVADFQIRDVRVRVTSSMAWVTMKAYLDIGAGPFNVTNVYELHDGRWYMVHH...

XP_057802493.1
MDFAVFAADYPSFLVALAATIFCLILASAVIFRRLKFGLSRSDCASTTEGRGIGAGEMTARLTENGGEKAAVERQSGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDNVTPSNGWKAYYAATRAVVTVNAEFFRIIRERMLQAMRQFWLHADYVKCFHATGESFSGDGELAASIYLGECG

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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