Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001281`

染色体: Chr03 坐标: 14986288-14989141 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001281`
名称	SmilChr03G001281
描述	SUN domain-containing protein 5
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	14986288 - 14989141 / `-`

ID 对照

NCBI Gene ID	`LOC131017784`
GeneID	`131017784`
locus_tag	`-`
NCBI Name	`LOC131017784`
原始查询	`SmilChr03G001281`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	SUN domain-containing protein 5
产物	SUN domain-containing protein 5
Arabidopsis	`AT4G23950` (AT4G23950) Galactose-binding protein [Source:NCBI gene (formerly Entrezgene);Acc:828495] identity=37.8; qcov=1.03; evalue=7.25e-121; confidence=medium
Rice	`Os01g0876400` (P0698A10.35-1) - identity=42.7; qcov=0.754; evalue=4.13e-108; confidence=medium
GO	GO:0005737 (cytoplasm); GO:0016020 (membrane); GO:0034975 (protein folding in endoplasmic reticulum)
KEGG	-
Pfam	PF07738 (Sad1_UNC)
InterPro	-
eggNOG	-
NR	GeneID:131017784

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.80000	`XP_057802490.1`
2	Endoplasmic reticulum membrane	内质网膜	0.80000	`XP_057802490.1`
3	Golgi apparatus	高尔基体	0.40000	`XP_057802490.1`
4	Nucleus	细胞核	0.00000	`XP_057802490.1`
5	Chromosome	染色体	0.00000	`XP_057802490.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:14986487`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B97
`Chr3:14986556`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B125,B54,B86,B97,C73
`Chr3:14986604`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B15,B19
`Chr3:14986627`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B5,B57,D1
`Chr3:14986646`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B69,C38
`Chr3:14986650`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B118,B41
`Chr3:14986905`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B12,B68,D2
`Chr3:14986931`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A18
`Chr3:14986944`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D1
`Chr3:14986956`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B78
`Chr3:14987248`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B71,B98
`Chr3:14987255`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A14,B38,B39,B50,C87

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802490.1

613 aa

306

613

Sad1_UNC

PF07738 Sad1_UNC 220-343 aa

XP_057802491.1

590 aa

295

590

Sad1_UNC

PF07738 Sad1_UNC 197-320 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802490.1`	Pfam	`PF07738`	Sad1_UNC	Family	220	343	4e-31	108.5	Sad1 / UNC-like C-terminal
`XP_057802491.1`	Pfam	`PF07738`	Sad1_UNC	Family	197	320	3.7e-31	108.6	Sad1 / UNC-like C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057946507.1
GAGACAGAGGCGCACGTGGAAGGCCCAAATAAGCAGTTTCCGCTACTTATTGGGAATATATGAATACTCATCAAACAAACTAAACAAACCATTATTAACTAACTAATTCAATCCAAACTGAAAAACAAAACCAAAAAAAATCATTCAATTTTTCGAGAATTGCAGTCTCGATTATTGCGTTGTTGTTGTTGAAGATTCGGTCATTGCTGCCGATTGTGCATTGCGAGCTTCACTGAGGGGGTTAGAGAGAGAGAGAGAAA...

XM_057946508.1
GAATACTCATCAAACAAACTAAACAAACCATTATTAACTAACTAATTCAATCCAAACTGAAAAACAAAACCAAAAAAAATCATTCAATTTTTCGAGAATTGCAGTCTCGATTATTGCGTTGTTGTTGTTGAAGATTCGGTCATTGCTGCCGATTGTGCATTGCGAGCTTCACTGAGGGGGTTAGAGAGAGAGAGAGAAAAACAATGAGAGATGAAGAAGCCTCGCAGCGTTGAGCCGACGAAACTCAATCACAAATCCTC...

CDS

2 records

下载 CDS FASTA

LOC131017784
ATGAAGAAGCCTCGCAGCGTTGAGCCGACGAAACTCAATCACAAATCCTCAAGAAATAGGGCTCACAAACTCGATTGCGACAAGAAAGCTGCCAAGAAAAGCTTCTACGACCTCTCCATTCCCCTCTTCTTCTCCTTCTGGTGTGGCGTTGTGTTGTTTCATGCTAAATTTGGCATCACTCGTGGAAATGAAGAAAATGGATATGAGAGTCTCCCTAACCCTAATGGAGTGGTGATGGAGCAAGATGTGTCTGTGATTGT...

LOC131017784
ATGAAGAAGCCTCGCAGCGTTGAGCCGACGAAACTCAATCACAAATCCTCAAGAAATAGGGCTCACAAACTCGATTGCGACAAGAAAGCTGCCAAGAAAAGCTTCTACGACCTCTCCATTCCCCTCTTCTTCTCCTTCTGGTGTGGCGTTGTGTTGTTTCATGCTAAATTTGGCATCACTCGTGGAAATGAAGGTGATTTGCTTGCGTGTGGGGGCGAGTGTCTCGATGAGAAGTTGCGTAACAATACTGTTCATGTTTC...

Protein

2 records

下载 Protein FASTA

XP_057802490.1
MKKPRSVEPTKLNHKSSRNRAHKLDCDKKAAKKSFYDLSIPLFFSFWCGVVLFHAKFGITRGNEGDLLACGGECLDEKLRNNTVHVSENGYESLPNPNGVVMEQDVSVIVEDFSIRDVHPNVEDLISGTGELEELLSIMLGYDSFTCQMEPHEEVGKSEPQAQNGRIHLTYPNLDEFKYISSKGKSGSPRQLVNITHRLEPDGTPYNYASASKGAKVVAHNKEAKGASNILDKDDDKYLRNPCSVGGKFFIIELADETLI...

XP_057802491.1
MKKPRSVEPTKLNHKSSRNRAHKLDCDKKAAKKSFYDLSIPLFFSFWCGVVLFHAKFGITRGNEENGYESLPNPNGVVMEQDVSVIVEDFSIRDVHPNVEDLISGTGELEELLSIMLGYDSFTCQMEPHEEVGKSEPQAQNGRIHLTYPNLDEFKYISSKGKSGSPRQLVNITHRLEPDGTPYNYASASKGAKVVAHNKEAKGASNILDKDDDKYLRNPCSVGGKFFIIELADETLIDAVKIANFEHHSSNFKDIELYGS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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