Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001282`

染色体: Chr03 坐标: 14998032-15005034 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001282`
名称	SmilChr03G001282
描述	probable inactive ATP-dependent zinc metalloprotease FTSHI 1, chloroplastic
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	14998032 - 15005034 / `-`

ID 对照

NCBI Gene ID	`LOC131017787`
GeneID	`131017787`
locus_tag	`-`
NCBI Name	`LOC131017787`
原始查询	`SmilChr03G001282`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable inactive ATP-dependent zinc metalloprotease FTSHI 1, chloroplastic
产物	probable inactive ATP-dependent zinc metalloprotease FTSHI 1%2C chloroplastic
Arabidopsis	`AT4G23940` (FtsHi1) FtsH extracellular protease family [Source:NCBI gene (formerly Entrezgene);Acc:828494] identity=72.8; qcov=0.934; evalue=0; confidence=high
Rice	`Os06g0669400` (OsFtsH2) - identity=39.1; qcov=0.527; evalue=1.33e-101; confidence=medium
GO	GO:0004176 (ATP-dependent peptidase activity); GO:0004222 (metalloendopeptidase activity); GO:0005524 (ATP binding); GO:0006508 (proteolysis); GO:0009534 (chloroplast thylakoid); GO:0016887 (ATP hydrolysis activity)
KEGG	-
Pfam	PF00004 (AAA); PF01434 (Peptidase_M41); PF07728 (AAA_5)
InterPro	-
eggNOG	-
NR	GeneID:131017787

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057802494.1`
2	Chloroplast thylakoid	类囊体	1.00000	`XP_057802494.1`
3	Chloroplast membrane	叶绿体膜	0.80000	`XP_057802494.1`
4	Chloroplast thylakoid membrane	类囊体膜	0.40000	`XP_057802494.1`
5	Chloroplast stroma	叶绿体基质	0.20000	`XP_057802494.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:14998507`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B118,B41
`Chr3:14999160`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr3:14999179`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B130,B32,C49
`Chr3:14999748`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A13,B67,B8,C33,C46
`Chr3:15000096`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B69,C38
`Chr3:15000115`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A18,C32,C68
`Chr3:15000220`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A8,B31,B48,C30
`Chr3:15000473`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B24,B34,B40,B93,C53
`Chr3:15001931`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B69,C38
`Chr3:15002089`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B5
`Chr3:15003956`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A16
`Chr3:15004106`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B59,B72,B73,C13,C86

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802494.1

942 aa

471

942

AAA_5

AAA

Peptidase_M41

PF07728 AAA_5 468-590 aa PF00004 AAA 469-609 aa PF01434 Peptidase_M41 704-804 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802494.1`	Pfam	`PF07728`	AAA_5	Domain	468	590	2.4e-05	25.0	AAA domain (dynein-related subfamily)
`XP_057802494.1`	Pfam	`PF00004`	AAA	Domain	469	609	3.6e-40	138.2	ATPase family associated with various cellular activities (AAA)
`XP_057802494.1`	Pfam	`PF01434`	Peptidase_M41	Domain	704	804	2.4e-14	54.4	Peptidase family M41

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057946511.1
CAACTTCTGTCGAAATAAACACGATTTCTTCTTCTTCATCTTCTCTTCCTTCGCCTGCTTTATCCCCTTCTCTGTCACTTTCCTTTTGGGTAATCTGCATTTTCTCATGATTTCAATTAAAGATAGCTTTATCAAATAATGTTGACAAACCTTTAACGTCGTCTTCATGTAAATTCTAAGCTTGCTCTGAAACCAAGAATGCCCAAATTCCATAACTTAGTATCACATCCCAATTTTTAGCTAGAAAATATGTATTCCAC...

CDS

1 records

下载 CDS FASTA

LOC131017787
ATGTATTCCACACCGTCGGGAGCTGCTAAGCCCTTTATTAATTTCCCAACGGTATTCCCTACCCAAAGAACTCAAAAGAATTTGTACTTTTCCCTGAAACCCACCAAAAGAGTGCAGCTCAATTGCCATCCACGTGTTTTTCTGCCGAGGGCGAGTTCGAATTCGAGTTCGTCGACGAATTCGGGAGCTGGAGATGAGGATTTTGTGACTAGGGTTTTGAGGGAAAACCCCAGCCAAATTGAGCCTAAGTATTTGATTGG...

Protein

1 records

下载 Protein FASTA

XP_057802494.1
MYSTPSGAAKPFINFPTVFPTQRTQKNLYFSLKPTKRVQLNCHPRVFLPRASSNSSSSTNSGAGDEDFVTRVLRENPSQIEPKYLIGDKLYTLREKESLNRKGFNERIWGIMNRLNLKALVSGSVKESGGESNNVKPETEVYLKDLLREYKGKLYVPEQVFVGNLSEEDEFDKNVKELPKMSYDDFRKYMNSDKVKLVSFKEDGGVLYGDNVYRDFVVDLKQIPGETSLHRTKWAMRLDEEQVQDLLEAYKGPRNEVEKQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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