Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G001283

染色体: Chr03 坐标: 15014583-15017645 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G001283
名称SmilChr03G001283
描述calcineurin B-like protein 7
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向15014583 - 15017645 / +

ID 对照

NCBI Gene IDLOC131017789
GeneID131017789
locus_tag-
NCBI NameLOC131017789
原始查询SmilChr03G001283

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述calcineurin B-like protein 7
产物calcineurin B-like protein 7
ArabidopsisAT1G64480 (CBL8)
calcineurin B-like protein 8 [Source:NCBI gene (formerly Entrezgene);Acc:842756]
identity=60.8; qcov=0.977; evalue=5.58e-92; confidence=high
RiceOs02g0291000 (OsCBL7)
-
identity=61.8; qcov=0.968; evalue=2.61e-91; confidence=high
GOGO:0005509 (calcium ion binding); GO:0019722 (calcium-mediated signaling); GO:0019900 (kinase binding)
KEGG-
PfamPF00036 (EF-hand_1); PF13202 (EF-hand_5); PF13499 (EF-hand_7); PF13833 (EF-hand_8)
InterPro-
eggNOG-
NRGeneID:131017789

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 0.80000 XP_057802497.1
2 Vacuole 液泡 0.60000 XP_057802498.1
3 Cell membrane 细胞膜 0.40000 XP_057802498.1
4 Cytosol 细胞质基质 0.20000 XP_057802497.1
5 Vacuole membrane 液泡膜 0.20000 XP_057802498.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:15017225 G A EMS_canonical_SNV CDS_variant 3 A7,B20,D1

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057802497.1
246 aa
N
1
123
246
EF-hand_7
EF-hand_8
EF-hand_5
EF-hand_1
C
PF13499 EF-hand_7 111-180 aa PF13833 EF-hand_8 124-183 aa PF13202 EF-hand_5 157-181 aa PF00036 EF-hand_1 157-183 aa
XP_057802498.1
219 aa
N
1
110
219
EF-hand_7
EF-hand_8
EF-hand_5
EF-hand_1
C
PF13499 EF-hand_7 111-180 aa PF13833 EF-hand_8 124-183 aa PF13202 EF-hand_5 157-181 aa PF00036 EF-hand_1 157-183 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057802497.1 Pfam PF13499 EF-hand_7 Domain 111 180 6.5e-18 65.6 EF-hand domain pair
XP_057802497.1 Pfam PF13833 EF-hand_8 Domain 124 183 2.4e-12 47.1 EF-hand domain pair
XP_057802497.1 Pfam PF13202 EF-hand_5 Domain 157 181 4.4e-15 55.1 EF hand
XP_057802497.1 Pfam PF00036 EF-hand_1 Domain 157 183 1.6e-20 71.8 EF hand domain
XP_057802498.1 Pfam PF13499 EF-hand_7 Domain 111 180 5.8e-19 68.9 EF-hand domain pair
XP_057802498.1 Pfam PF13833 EF-hand_8 Domain 124 183 1.5e-12 47.8 EF-hand domain pair
XP_057802498.1 Pfam PF13202 EF-hand_5 Domain 157 181 2.4e-15 55.9 EF hand
XP_057802498.1 Pfam PF00036 EF-hand_1 Domain 157 183 8.7e-21 72.6 EF hand domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057946515.1
ATAACTACGTATGAGAAACACTGAATAGCACAGAAACCACTTTCACCAGAAAACAAAAAAAAGTAAACTGTTGGAATCTTTGATTCTTCTTCAGCATTATGAAGTCTATAACCAACTGCTTCTGCTTGTCCAAAGCTAAACAAGCTGCAGGTTTTGATAACCATGCAATTCTTGCTTCTGAGACTGCTTTTAATGTGAATGAAGTAGAGGCTCTCCACAGCCTCTTCGAGCAACTAAGCTGTTCGATTATAGATGATGGT...
XM_057946514.1
GCACAGAAACCACTTTCACCAGAAAACAAAAAAAAGTAAACTGTTGGAATCTTTGATTCTTCTTCAGCATTATGAAGTCTATAACCAACTGCTTCTGCTTGTCCAAAGCTAAACAAGCTGCAGGTTTTGATAACCATGCAATTCTTGCTTCTGAGACTGCTTTTAATGTGAATGAAGTAGAGGCTCTCCACAGCCTCTTCGAGCAACTAAGCTGTTCGATTATAGATGATGGTCGAATTCACAAGGAAGAATTCTTGCTT...

CDS

2 records

下载 CDS FASTA
LOC131017789
ATGAAGTCTATAACCAACTGCTTCTGCTTGTCCAAAGCTAAACAAGCTGCAGGTTTTGATAACCATGCAATTCTTGCTTCTGAGACTGCTTTTAATGTGAATGAAGTAGAGGCTCTCCACAGCCTCTTCGAGCAACTAAGCTGTTCGATTATAGATGATGGTCGAATTCACAAGGAAGAATTCTTGCTTGCACTTTTCAATTGCAGCAGCACCAAGAATCTCCTAGCAGAAAGGTTGTTCACTCTGTTTGATCTAAAGAA...
LOC131017789
ATGAAGTCTATAACCAACTGCTTCTGCTTGTCCAAAGCTAAACAAGCTGCAGGTTTTGATAACCATGCAATTCTTGCTTCTGAGACTGCTTTTAATGTGAATGAAGTAGAGGCTCTCCACAGCCTCTTCGAGCAACTAAGCTGTTCGATTATAGATGATGGTCGAATTCACAAGGAAGAATTCTTGCTTGCACTTTTCAATTGCAGCAGCACCAAGAATCTCCTAGCAGAAAGGTTGTTCACTCTGTTTGATCTAAAGAA...

Protein

2 records

下载 Protein FASTA
XP_057802497.1
MKSITNCFCLSKAKQAAGFDNHAILASETAFNVNEVEALHSLFEQLSCSIIDDGRIHKEEFLLALFNCSSTKNLLAERLFTLFDLKKNGVIEFGEFVRTLNIFHPDTAAQDKIEFAFKLYDLRHTGYIEREELKEMVVATLRESELSLSEDDVEAIVDKTLQEADLNGDGRIDLEEWKELVAKYPSLTKNMTLPHLRLVDHHDSHFSAQQAEPNDTLISCSNHREITLAFPNFVMETEVVDSELVC
XP_057802498.1
MKSITNCFCLSKAKQAAGFDNHAILASETAFNVNEVEALHSLFEQLSCSIIDDGRIHKEEFLLALFNCSSTKNLLAERLFTLFDLKKNGVIEFGEFVRTLNIFHPDTAAQDKIEFAFKLYDLRHTGYIEREELKEMVVATLRESELSLSEDDVEAIVDKTLQEADLNGDGRIDLEEWKELVAKYPSLTKNMTLPHLREITLAFPNFVMETEVVDSELVC

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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