Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001288`

染色体: Chr03 坐标: 15089338-15095244 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001288`
名称	SmilChr03G001288
描述	uncharacterized SmilChr03G001288
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	15089338 - 15095244 / `-`

ID 对照

NCBI Gene ID	`LOC131017793`
GeneID	`131017793`
locus_tag	`-`
NCBI Name	`LOC131017793`
原始查询	`SmilChr03G001288`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述	Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842751]; symbol=AT1G64430; hit=AT1G64430; species=arabidopsis; confidence=high
产物	Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842751]; symbol=AT1G64430; hit=AT1G64430; species=arabidopsis; confidence=high
Arabidopsis	`AT1G64430` (AT1G64430) Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842751] identity=62.5; qcov=0.965; evalue=0; confidence=high
Rice	`Os08g0332700` (OJ1224_G08.19-1) - identity=61.3; qcov=0.855; evalue=0; confidence=high
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131017793

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057802502.1`
2	Chloroplast thylakoid	类囊体	0.80000	`XP_057802502.1`
3	Chloroplast membrane	叶绿体膜	0.60000	`XP_057802502.1`
4	Chloroplast stroma	叶绿体基质	0.20000	`XP_057802502.1`
5	Chloroplast thylakoid membrane	类囊体膜	0.20000	`XP_057802502.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:15089819`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B5,B57
`Chr3:15089842`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A10,B48,D5
`Chr3:15090147`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B40
`Chr3:15090356`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B31
`Chr3:15090595`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C53
`Chr3:15091021`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B107,B122,B41
`Chr3:15091611`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr3:15091707`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:15093093`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B107,B122,B41
`Chr3:15093112`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B24,B40,B93,C53
`Chr3:15093905`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr3:15093962`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XR_009099860.1
ATCAAGTGTGGTTTTACGAGGGCCTCTCATTCTCATACTTCATCCCTAACCTCTGTCTCTACTCTTACTCCTAAATCCGAATTCTGCATTTCTCTCTCTAAAATCCCGCTTGAAATTTATTTTCTGAAATAGCACACAAACACATGAATCTTCAGTCCTGCTGCTGCTCCTCCCCTTTGCTCCCCCTCCACCCACCCAGGCAACACGCCGCCGCCCCCCACTTTTGCTTCCTCTTTCCCGCCAAGACCAAGCACCACTTC...

XM_057946520.1
ATTTTTATCAAGTGTGGTTTTACGAGGGCCTCTCATTCTCATACTTCATCCCTAACCTCTGTCTCTACTCTTACTCCTAAATCCGAATTCTGCATTTCTCTCTCTAAAATCCCGCTTGAAATTTATTTTCTGAAATAGCACACAAACACATGAATCTTCAGTCCTGCTGCTGCTCCTCCCCTTTGCTCCCCCTCCACCCACCCAGGCAACACGCCGCCGCCCCCCACTTTTGCTTCCTCTTTCCCGCCAAGACCAAGCAC...

CDS

2 records

下载 CDS FASTA

LOC131017793
ATGAATCTTCAGTCCTGCTGCTGCTCCTCCCCTTTGCTCCCCCTCCACCCACCCAGGCAACACGCCGCCGCCCCCCACTTTTGCTTCCTCTTTCCCGCCAAGACCAAGCACCACTTCAATTTTGCTTCCCCCATTTCCAGACAGACCGCTGCCGCCTCCAACGCCAACAGTCGGGTGTCCTCCTCGCCGGAGGAAGGGAGCAAGCTGGCGTCGGAGCTTCTCCACGATGAGCTGCTGGCCCGTGTTTCTGCCGCCGCGGA...

Protein

2 records

下载 Protein FASTA

XP_057802502.1
MNLQSCCCSSPLLPLHPPRQHAAAPHFCFLFPAKTKHHFNFASPISRQTAAASNANSRVSSSPEEGSKLASELLHDELLARVSAAADAAEVLRLISEDRRSGGVVSASDCRLIISAALDRGNADLTLSVFSAMRSSFGSGTGWVENATSVERWKWSRPDVNTYMLLVKGLAASLRVSDALRMVDCVCRVGVSPGEEVPFGKVVRCPTCMIAVAVAQPQQGIQVVSCSKCRYQYELVSGNILTMESEEIGMDVPAWKRGLQ...

XP_057802503.1
MNLQSCCCSSPLLPLHPPRQHAAAPHFCFLFPAKTKHHFNFASPISRQTAAASNANSRVSSSPEEGSKLASELLHDELLARVSAAADAAEVLRLISEDRRSGGVVSASDCRLIISAALDRGNADLTLSVFSAMRSSFGSGWVENATSVERWKWSRPDVNTYMLLVKGLAASLRVSDALRMVDCVCRVGVSPGEEVPFGKVVRCPTCMIAVAVAQPQQGIQVVSCSKCRYQYELVSGNILTMESEEIGMDVPAWKRGLQFL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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