Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001306`

染色体: Chr03 坐标: 15309028-15318458 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001306`
名称	SmilChr03G001306
描述	uncharacterized SmilChr03G001306
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	15309028 - 15318458 / `-`

ID 对照

NCBI Gene ID	`LOC131017811`
GeneID	`131017811`
locus_tag	`-`
NCBI Name	`LOC131017811`
原始查询	`SmilChr03G001306`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	C2 domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:821366]; symbol=ATSYTF; hit=AT3G18370; species=arabidopsis; confidence=high
产物	C2 domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:821366]; symbol=ATSYTF; hit=AT3G18370; species=arabidopsis; confidence=high
Arabidopsis	`AT3G18370` (ATSYTF) C2 domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:821366] identity=56.4; qcov=0.996; evalue=0; confidence=high
Rice	`Os01g0128800` (OsNTMC2T3) - identity=60.6; qcov=0.163; evalue=1.02e-47; confidence=weak
GO	GO:0008289 (lipid binding)
KEGG	-
Pfam	PF00168 (C2)
InterPro	-
eggNOG	-
NR	GeneID:131017811

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.60000	`XP_057802527.1`
2	Nucleus membrane	核膜	0.20000	`XP_057802527.1`
3	Golgi apparatus	高尔基体	0.20000	`XP_057802527.1`
4	Nucleus	细胞核	0.00000	`XP_057802527.1`
5	Chromosome	染色体	0.00000	`XP_057802527.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:15309377`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:15309612`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr3:15309654`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C58,C7
`Chr3:15310571`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B118,C44
`Chr3:15310949`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,C42

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802527.1

822 aa

411

822

PF00168 C2 290-393 aa PF00168 C2 480-577 aa PF00168 C2 613-708 aa

XP_057802528.1

780 aa

390

780

PF00168 C2 248-351 aa PF00168 C2 438-535 aa PF00168 C2 571-666 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802527.1`	Pfam	`PF00168`	C2	Domain	290	393	6.6e-46	155.5	C2 domain
`XP_057802527.1`	Pfam	`PF00168`	C2	Domain	480	577	6.6e-46	155.5	C2 domain
`XP_057802527.1`	Pfam	`PF00168`	C2	Domain	613	708	6.6e-46	155.5	C2 domain
`XP_057802528.1`	Pfam	`PF00168`	C2	Domain	248	351	5.5e-46	155.8	C2 domain
`XP_057802528.1`	Pfam	`PF00168`	C2	Domain	438	535	5.5e-46	155.8	C2 domain
`XP_057802528.1`	Pfam	`PF00168`	C2	Domain	571	666	5.5e-46	155.8	C2 domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057946545.1
AATAAGAAAACCAAAATCTACCTTCAACTACCTTTCTTTTGCTGCCGCTGTTTCTTCTTAGTTCTTAACTAAAATCTTCTCTCACTTTGACCACAACCATTACTTTTCAGCTTTGCTGCTCAATGTTATATATAAAAATCACTACTTTTTCTTTTTGCCCTTTGGATTTCGAGCAAATGATTTGGAGCTACTTTTCTCTCAGTTGCCAAAGATGAACAAAATTGCACTAAGCGCTGAATTCTTGATGGGCCCAATTTTTC...

XM_057946544.1
ATAAGAAAACCAAAATCTACCTTCAACTACCTTTCTTTTGCTGCCGCTGTTTCTTCTTAGTTCTTAACTAAAATCTTCTCTCACTTTGACCACAACCATTACTTTTCAGCTTTGCTGCTCAATGTTATATATAAAAATCACTACTTTTTCTTTTTGCCCTTTGGATTTCGAGCAAATGATTTGGAGCTACTTTTCTCTCAGTTGCCAAAGATGAACAAAATTGCACTAAGCGCTGAATTCTTGATGGGCCCAATTTTTCT...

CDS

2 records

下载 CDS FASTA

LOC131017811
ATGGCAAGAACAAAGAAGAAATTGTTTGACGTGAAGGGGGCGGTGGAGTCATGGTACAAGTTGCTGGAGCAGCAGCCGCTGCTTCCGTTTGTTGTACCTCTGCTGCTGTTCCTTTGGGCTGTGGAGAAGTGGTTTTTCTCTCTGTCAAATTGGGTTCTTCTTGGTTGTGCTGTTTGGGCAACAATTCAGTATGGAAGTTATCAGCAACGAAACATTGTAGACGACTTGAATAAGAAATGGATGCAAGTAGCACTACATGC...

Protein

2 records

下载 Protein FASTA

XP_057802527.1
MARTKKKLFDVKGAVESWYKLLEQQPLLPFVVPLLLFLWAVEKWFFSLSNWVLLGCAVWATIQYGSYQQRNIVDDLNKKWMQVALHASPVTPLEHCEWLNKLLMEVWLNYINPKLSSRFASIVERRLKHRKSRLIERIELQGFSLGSRPPLLGLQGTCWATSGDQRILRCSFDWDSDDVNILLSAKLAMPLMGTARIVVNSIHVKGNLLFMPILEGKAIAYCFVSTPEVRLGVAFGSGGSQSLPATELPGVSSWLVKLAT...

XP_057802528.1
MARTKKKLFDVKGAVESWYKLLEQQPLLPFVVPLLLFLWAVEKWFFSLSNWVLLGCAVWATIQYGSYQQRNIVDDLNKKWMQVALHASPVTPLEHCEWLNKLLMEVWLNYINPKLSSRFASIVERRLKHRKSRLIERIELQGFSLGSRPPLLGLQGTCWATSGDQLLFMPILEGKAIAYCFVSTPEVRLGVAFGSGGSQSLPATELPGVSSWLVKLATETLNKRMVEPRRQCLALPPEDLHKKAVGGILYVTVLSASKLL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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