当前解析结果
SmilChr03G001314| 统一新 Gene ID | SmilChr03G001314 |
|---|---|
| 名称 | SmilChr03G001314 |
| 描述 | abscisic acid receptor PYL8-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 15408479 - 15412295 / + |
| NCBI Gene ID | LOC131017817 |
|---|---|
| GeneID | 131017817 |
| locus_tag | - |
| NCBI Name | LOC131017817 |
| 原始查询 | SmilChr03G001314 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | abscisic acid receptor PYL8-like |
| 产物 | abscisic acid receptor PYL8-like |
| Arabidopsis | AT5G53160 (RCAR3)regulatory components of ABA receptor 3 [Source:NCBI gene (formerly Entrezgene);Acc:835397] identity=80.4; qcov=0.908; evalue=2.06e-103; confidence=high |
| Rice | Os05g0213500 (OsPYL/RCAR5)- identity=78.6; qcov=0.908; evalue=1.63e-94; confidence=high |
| GO | GO:0004864 (protein phosphatase inhibitor activity); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0009738 (abscisic acid-activated signaling pathway); GO:0010427 (abscisic acid binding); GO:0038023 (signaling receptor activity); GO:0080163 (GO:0080163) |
| KEGG | smil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage)); smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF10604 (Polyketide_cyc2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017817 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057802535.1 |
| 2 | Nucleus | 细胞核 | 0.80000 | XP_057802535.1 |
| 3 | Endoplasmic reticulum | 内质网 | 0.60000 | XP_057802534.1 |
| 4 | Cytoplasm | 细胞质 | 0.40000 | XP_057802535.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057802535.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:15410824 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
Chr3:15411069 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B130 |
Chr3:15411255 |
C |
CTT |
2bp_insertion | frameshift_variant | 95 | A10,A16,A18,A19,A25,B103,B106,B11,B110,B111,B114,B115,B12,B121,B127,B128,B129,B136,B15,B17,B19,B2,B20,B21,B23,B24,B26,B3,B34,B36,B37,B38,B4,B40,B44,B45,B46,B49,B50,B53,B54,B55,B56,B60,B61,B62,B65,B66,B68,B71,B75,B78,B80,B81,B86,B88,B9,B90,B93,B94,B95,B96,B97,B99,C11,C19,C29,C3,C36,C39,C4,C42,C44,C45,C47,C49,C50,C55,C59,C6,C61,C65,C66,C67,C69,C7,C76,C79,C82,C9,D10,D2,D3,D5,D8 |
Chr3:15411278 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B118 |
Chr3:15411334 |
C |
CT |
1bp_insertion | frameshift_variant | 128 | A1,A10,A11,A13,A14,A22,A23,A24,A6,A8,A9,B1,B102,B108,B110,B112,B113,B114,B119,B12,B120,B123,B124,B125,B129,B13,B130,B131,B134,B135,B136,B138,B139,B14,B140,B17,B2,B22,B23,B25,B27,B29,B30,B33,B38,B39,B4,B42,B43,B44,B46,B5,B50,B51,B52,B53,B55,B57,B58,B59,B6,B64,B66,B67,B69,B70,B71,B72,B73,B77,B8,B84,B85,B87,B88,B89,B91,B97,C1,C12,C13,C14,C15,C16,C17,C21,C22,C23,C25,C26,C29,C31,C33,C34,C37,C38,C41,C45,C46,C48,C5,C50,C52,C54,C56,C58,C63,C64,C66,C67,C70,C71,C72,C73,C77,C78,C79,C80,C81,C84,C87,D1,D10,D11,D3,D6,D7,D9 |
Chr3:15411437 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
Chr3:15411890 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B1,B68 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057802534.1PF10604
Polyketide_cyc2 29-110 aa
XP_057802535.1PF10604
Polyketide_cyc2 29-172 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802534.1 |
Pfam | PF10604 |
Polyketide_cyc2 | Family | 29 | 110 | 2.3e-09 | 38.3 | Polyketide cyclase / dehydrase and lipid transport |
XP_057802535.1 |
Pfam | PF10604 |
Polyketide_cyc2 | Family | 29 | 172 | 1e-19 | 71.9 | Polyketide cyclase / dehydrase and lipid transport |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。