当前解析结果
SmilChr03G001316| 统一新 Gene ID | SmilChr03G001316 |
|---|---|
| 名称 | SmilChr03G001316 |
| 描述 | mitochondrial inner membrane protease ATP23-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 15442504 - 15444144 / - |
| NCBI Gene ID | LOC131017819 |
|---|---|
| GeneID | 131017819 |
| locus_tag | - |
| NCBI Name | LOC131017819 |
| 原始查询 | SmilChr03G001316 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | mitochondrial inner membrane protease ATP23-like |
| 产物 | mitochondrial inner membrane protease ATP23-like |
| Arabidopsis | AT3G03420 (AT3G03420)Ku70-binding family protein [Source:NCBI gene (formerly Entrezgene);Acc:821258] identity=44.7; qcov=1.23; evalue=1.15e-52; confidence=medium |
| Rice | Os04g0482700- identity=42.5; qcov=1.16; evalue=1.09e-37; confidence=medium |
| GO | GO:0004222 (metalloendopeptidase activity); GO:0031314 (extrinsic component of mitochondrial inner membrane); GO:0033615 (mitochondrial proton-transporting ATP synthase complex assembly); GO:0034982 (mitochondrial protein processing) |
| KEGG | - |
| Pfam | PF09768 (Peptidase_M76) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017819 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 0.80000 | XP_057802537.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057802538.1 |
| 3 | Mitochondrion intermembrane space | Mitochondrion intermembrane space | 0.60000 | XP_057802537.1 |
| 4 | Cytosol | 细胞质基质 | 0.60000 | XP_057802538.1 |
| 5 | Nucleus | 细胞核 | 0.40000 | XP_057802538.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:15442847 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A10,B48,B74,D5 |
Chr3:15443351 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C68 |
Chr3:15443425 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B133 |
Chr3:15443425 |
AC |
A |
1bp_deletion | CDS_variant | 1 | B133 |
Chr3:15443768 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B100,B13,B9,C42,C78 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057802537.1PF09768
Peptidase_M76 30-196 aa
XP_057802538.1PF09768
Peptidase_M76 30-82 aa
PF09768
Peptidase_M76 80-151 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802537.1 |
Pfam | PF09768 |
Peptidase_M76 | Family | 30 | 196 | 2e-52 | 178.1 | Peptidase M76 family |
XP_057802538.1 |
Pfam | PF09768 |
Peptidase_M76 | Family | 30 | 82 | 3.4e-29 | 102.5 | Peptidase M76 family |
XP_057802538.1 |
Pfam | PF09768 |
Peptidase_M76 | Family | 80 | 151 | 3.4e-29 | 102.5 | Peptidase M76 family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。