当前解析结果
SmilChr03G001320| 统一新 Gene ID | SmilChr03G001320 |
|---|---|
| 名称 | SmilChr03G001320 |
| 描述 | uncharacterized SmilChr03G001320 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 15461034 - 15462749 / + |
| NCBI Gene ID | LOC131018439 |
|---|---|
| GeneID | 131018439 |
| locus_tag | - |
| NCBI Name | LOC131018439 |
| 原始查询 | SmilChr03G001320 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509]; symbol=AT1G19260; hit=AT1G19260; species=arabidopsis; confidence=medium |
| 产物 | TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509]; symbol=AT1G19260; hit=AT1G19260; species=arabidopsis; confidence=medium |
| Arabidopsis | AT1G19260 (AT1G19260)TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509] identity=40.1; qcov=0.988; evalue=1.2e-138; confidence=medium |
| Rice | Os02g0301400- identity=35.6; qcov=0.63; evalue=6.98e-64; confidence=medium |
| GO | GO:0046983 (protein dimerization activity) |
| KEGG | - |
| Pfam | PF05699 (Dimer_Tnp_hAT); PF14291 (DUF4371); PF27073 (FAM200-ZBED5_RNase-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018439 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057803145.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057803145.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057803145.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057803145.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057803145.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:15461356 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B121 |
Chr3:15461356 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B121 |
Chr3:15461469 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B55,B78,C20,C87,D10 |
Chr3:15461529 |
C |
T |
EMS_canonical_SNV | stop_gained | 8 | B123,B127,B128,B130,B39,C54,C58,C87 |
Chr3:15461531 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B38,B39,B91,D6 |
Chr3:15461575 |
AC |
A |
1bp_deletion | frameshift_variant | 5 | A11,B104,C2,C62,C86 |
Chr3:15461575 |
AC |
A |
1bp_deletion | CDS_variant | 5 | A11,B104,C2,C62,C86 |
Chr3:15461582 |
T |
TC |
1bp_insertion | frameshift_variant | 3 | A9,B115,B59 |
Chr3:15461582 |
T |
TC |
1bp_insertion | CDS_variant | 3 | A9,B115,B59 |
Chr3:15461624 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A11,C62,C86 |
Chr3:15461640 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A11,C62,C86 |
Chr3:15461651 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A11,C86 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803145.1PF14291
DUF4371 6-143 aa
PF27073
FAM200-ZBED5_RNase-like 30-147 aa
PF05699
Dimer_Tnp_hAT 484-542 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803145.1 |
Pfam | PF14291 |
DUF4371 | Domain | 6 | 143 | 2.3e-52 | 178.7 | ZMYM1/FAM200, RNase-like domain |
XP_057803145.1 |
Pfam | PF27073 |
FAM200-ZBED5_RNase-like | Domain | 30 | 147 | 2.2e-10 | 41.2 | FAM200/ZBED5 RNase-like |
XP_057803145.1 |
Pfam | PF05699 |
Dimer_Tnp_hAT | Domain | 484 | 542 | 8.9e-10 | 38.9 | hAT family C-terminal dimerisation region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。