Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.

Resolved gene

`SmilChr03G001324`

Chromosome: Chr03 Coordinates: 15491949-15495918 Strand: + Biotype: protein_coding

Basic Information

Standard Gene ID	`SmilChr03G001324`
Name	SmilChr03G001324
Description	uncharacterized SmilChr03G001324
Chromosome / SeqID	Chr03 / NC_080389.1
Coordinates and Strand	15491949 - 15495918 / `+`

ID Mapping

NCBI Gene ID	`LOC131017822`
GeneID	`131017822`
locus_tag	`-`
NCBI Name	`LOC131017822`
Original query	`SmilChr03G001324`

Open ID mapping

Functional Annotation

Source	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
Description	hit=Os05g0214400; species=rice; confidence=high
Product	hit=Os05g0214400; species=rice; confidence=high
Arabidopsis	`AT5G41850` (AT5G41850) alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:834190] identity=61.3; qcov=0.971; evalue=1.65e-102; confidence=high
Rice	`Os05g0214400` - identity=69.6; qcov=0.833; evalue=2.86e-106; confidence=high
GO	-
KEGG	-
Pfam	PF00561 (Abhydrolase_1); PF01738 (DLH); PF08386 (Abhydrolase_4); PF12695 (Abhydrolase_5); PF12697 (Abhydrolase_6); PF20408 (Abhydrolase_11)
InterPro	-
eggNOG	-
NR	GeneID:131017822

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Subcellular Localization Top 5

Rank	Location	Chinese	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057802542.1`
2	Nucleus	细胞核	0.60000	`XP_057802542.1`
3	Cytoplasm	细胞质	0.60000	`XP_057802542.1`
4	Chromosome	染色体	0.00000	`XP_057802542.1`
5	Centromere	着丝粒	0.00000	`XP_057802542.1`

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EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position	REF	ALT	Type	Effect	Carriers	Samples
`Chr3:15492168`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B111,D2
`Chr3:15492753`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B118
`Chr3:15494374`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B120,B138
`Chr3:15494385`	`TG`	`T`	1bp_deletion	frameshift_variant	2	A8,C80
`Chr3:15494385`	`TG`	`T`	1bp_deletion	CDS_variant	2	A8,C80
`Chr3:15494464`	`CA`	`C`	1bp_deletion	frameshift_variant	3	B99,C28,C75
`Chr3:15494464`	`CA`	`C`	1bp_deletion	CDS_variant	3	B99,C28,C75

Open EMS variants

Predicted Protein Domains

Domain results are from the Pfam-A HMM database and HMMER hmmscan; positions are amino-acid coordinates on the corresponding protein sequence.

XP_057802542.1

245 aa

122

245

Abhydrolase_1

Abhydrolase_11

Abhydrolase_6

Abhydrolase_5

DLH

Abhydrolase_4

PF00561 Abhydrolase_1 43-148 aa PF20408 Abhydrolase_11 43-238 aa PF12697 Abhydrolase_6 45-151 aa PF12695 Abhydrolase_5 103-208 aa PF01738 DLH 114-241 aa PF08386 Abhydrolase_4 138-209 aa

Protein ID	Source	Domain ID	Domain name	Type	Start aa	End aa	E-value	Score	Description
`XP_057802542.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	43	148	6.3e-12	46.4	alpha/beta hydrolase fold
`XP_057802542.1`	Pfam	`PF20408`	Abhydrolase_11	Domain	43	238	2.1e-44	152.3	Alpha/beta hydrolase domain
`XP_057802542.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	45	151	3.7e-07	31.7	Alpha/beta hydrolase family
`XP_057802542.1`	Pfam	`PF12695`	Abhydrolase_5	Domain	103	208	2.7e-09	37.7	Alpha/beta hydrolase family
`XP_057802542.1`	Pfam	`PF01738`	DLH	Domain	114	241	1.3e-05	25.7	Dienelactone hydrolase family
`XP_057802542.1`	Pfam	`PF08386`	Abhydrolase_4	Family	138	209	2.7e-05	24.9	TAP-like protein

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

2 records

Download cDNA FASTA

XR_009099873.1
AACTTGCCTGGTACATATCATAGGGCTTTTCTTTGGAATTCAAATTTAGGATTGGAGAGATGGTGACAAAGCGCGCTTCAAAGAGAAGACGCAAGAACCGCAACCTTCCTACTCAACAAGAGGAGCAAGAGCAACCGCCACAAGTAGGAGTCGACGCCGATACCAAAAATTCTGCACATGAGTCTCCGGTGGTCGTGCTTGCTCACGGCGCCGGAGCGCCTTCCTCTTCCGATTGGATGCTTAGATGGAAAGTTATGCTG...

XM_057946559.1
CTTGCCTGGTACATATCATAGGGCTTTTCTTTGGAATTCAAATTTAGGATTGGAGAGATGGTGACAAAGCGCGCTTCAAAGAGAAGACGCAAGAACCGCAACCTTCCTACTCAACAAGAGGAGCAAGAGCAACCGCCACAAGTAGGAGTCGACGCCGATACCAAAAATTCTGCACATGAGTCTCCGGTGGTCGTGCTTGCTCACGGCGCCGGAGCGCCTTCCTCTTCCGATTGGATGCTTAGATGGAAAGTTATGCTGGC...

CDS

1 records

Download CDS FASTA

LOC131017822
ATGGTGACAAAGCGCGCTTCAAAGAGAAGACGCAAGAACCGCAACCTTCCTACTCAACAAGAGGAGCAAGAGCAACCGCCACAAGTAGGAGTCGACGCCGATACCAAAAATTCTGCACATGAGTCTCCGGTGGTCGTGCTTGCTCACGGCGCCGGAGCGCCTTCCTCTTCCGATTGGATGCTTAGATGGAAAGTTATGCTGGCCAAGACATTAAATGCCGTTGAAGTAGTGACATTTGACTATCCCTACATTGCTGGAGG...

Protein

1 records

Download Protein FASTA

XP_057802542.1
MVTKRASKRRRKNRNLPTQQEEQEQPPQVGVDADTKNSAHESPVVVLAHGAGAPSSSDWMLRWKVMLAKTLNAVEVVTFDYPYIAGGKRRAPPKAEKLVDFHCDIVRKAMAMYPGHPLVLAGKSMGSRVSCMVAGEKDVSASAVVCLGYPLKGRNGAVRDDTLLQLKVPVMFVQGSKDGLCPLEKLEAVRKKMNSATALHVIEGGDHSFKISKMHLQSTGSNQEESEQQAVEAIAAFVSQHLKEG

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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