当前解析结果
SmilChr03G001326| 统一新 Gene ID | SmilChr03G001326 |
|---|---|
| 名称 | SmilChr03G001326 |
| 描述 | uncharacterized SmilChr03G001326 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 15519601 - 15521132 / - |
| NCBI Gene ID | LOC131017824 |
|---|---|
| GeneID | 131017824 |
| locus_tag | - |
| NCBI Name | LOC131017824 |
| 原始查询 | SmilChr03G001326 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 1-acyl-sn-glycerol-3-phosphate acyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:842742]; symbol=AT1G64355; hit=AT1G64355; species=arabidopsis; confidence=high |
| 产物 | 1-acyl-sn-glycerol-3-phosphate acyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:842742]; symbol=AT1G64355; hit=AT1G64355; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G64355 (AT1G64355)1-acyl-sn-glycerol-3-phosphate acyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:842742] identity=82.4; qcov=0.635; evalue=2.02e-69; confidence=high |
| Rice | Os05g0571400- identity=68.1; qcov=0.716; evalue=1.95e-60; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF12159 (DUF3593) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017824 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057802544.1 |
| 2 | Chloroplast thylakoid | 类囊体 | 1.00000 | XP_057802544.1 |
| 3 | Chloroplast thylakoid membrane | 类囊体膜 | 1.00000 | XP_057802544.1 |
| 4 | Chloroplast membrane | 叶绿体膜 | 0.20000 | XP_057802544.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057802544.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:15519936 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B119 |
Chr3:15519936 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B119 |
Chr3:15519959 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A9,B2,B46,B99,C56 |
Chr3:15520799 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B45,C24,C78 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057802544.1PF12159
DUF3593 86-171 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802544.1 |
Pfam | PF12159 |
DUF3593 | Family | 86 | 171 | 6.8e-39 | 132.5 | Protein of unknown function (DUF3593) |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。