Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001342`

染色体: Chr03 坐标: 15674776-15677238 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001342`
名称	SmilChr03G001342
描述	COP1-interactive protein 1-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	15674776 - 15677238 / `-`

ID 对照

NCBI Gene ID	`LOC131017833`
GeneID	`131017833`
locus_tag	`-`
NCBI Name	`LOC131017833`
原始查询	`SmilChr03G001342`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述	COP1-interactive protein 1-like
产物	COP1-interactive protein 1-like
Arabidopsis	`AT1G64330` (AT1G64330) myosin heavy chain-like protein [Source:NCBI gene (formerly Entrezgene);Acc:842739] identity=35.6; qcov=0.83; evalue=1.52e-40; confidence=medium
Rice	`Os01g0656600` - identity=27.4; qcov=0.369; evalue=8.08e-09; confidence=low
GO	GO:0003779 (actin binding)
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131017833

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Peroxisome	过氧化物酶体	0.60000	`XP_057802554.1`
2	Nucleus	细胞核	0.20000	`XP_057802554.1`
3	Nucleus membrane	核膜	0.20000	`XP_057802554.1`
4	Cytoplasm	细胞质	0.20000	`XP_057802554.1`
5	Cytosol	细胞质基质	0.20000	`XP_057802554.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:15675102`	`TCG`	`T`	2bp_deletion	frameshift_variant	1	D2
`Chr3:15675102`	`TCG`	`T`	2bp_deletion	CDS_variant	1	D2
`Chr3:15675129`	`G`	`GT`	1bp_insertion	stop_gained,frameshift_variant	6	B107,B24,B40,B8,C53,C60
`Chr3:15675153`	`CTT`	`C`	2bp_deletion	frameshift_variant	6	B107,B24,B40,B8,C53,C60
`Chr3:15675158`	`C`	`CA`	1bp_insertion	frameshift_variant	6	B107,B24,B40,B8,C53,C60
`Chr3:15675249`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B38
`Chr3:15675584`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B98,C14
`Chr3:15676420`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B107,B66,B98
`Chr3:15676444`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B42,B43,C47
`Chr3:15676459`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B109
`Chr3:15676491`	`G`	`GT`	1bp_insertion	frameshift_variant	2	B107,B66
`Chr3:15676491`	`G`	`GT`	1bp_insertion	CDS_variant	2	B107,B66

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057946573.1
GATTTATCTTCAAAACCCCAAAAAGACAAAACAAGGATACACGTAAAAGCCGAATATTTTTGAATTTGAATTTCTAAAAGATTAGATTTGCATAGTAATTCTAAATTATGTCATAAATAAATATCATCGAAATCGTGGAACTGCCAGTGAGGATTAGCAACCAAGAGAATTCAACAGAGAAATGCCGAAGCAGCGGTGGCGCAAGTCGTTTAAATCCTTTATAGATCCTAGTAAAGACGAGCAGCTCAGAGGAATCAAAA...

XM_057946571.1
TCATCGAAATCGTGGAACTGCCAGTGAGGATTAGCAACCAAGGTCCAGCTGTCCGCCATCATAGCAATTAGCAAGTTTAATCCTTACTAAATTCTCATTTTTAAATAGAATTCAACAGAGAAATGCCGAAGCAGCGGTGGCGCAAGTCGTTTAAATCCTTTATAGATCCTAGTAAAGACGAGCAGCTCAGAGGAATCAAAACAGAAATTGATGGAAATGTGCAGAAAATCTTCAGTTTTCTGAAAGAAAAAGACGGAGAT...

CDS

3 records

下载 CDS FASTA

LOC131017833
ATGCCGAAGCAGCGGTGGCGCAAGTCGTTTAAATCCTTTATAGATCCTAGTAAAGACGAGCAGCTCAGAGGAATCAAAACAGAAATTGATGGAAATGTGCAGAAAATCTTCAGTTTTCTGAAAGAAAAAGACGGAGATGATAGGAAAGAGGAGCTGGCAGATTTAGTTCACGATTTCCACAAACAGTTCGAGTCGCTTTACGCTCGTCATGATCATCTAACTGGAGAATTGAGGAATAAGTTTCGCGGCAAGAGCGGGAG...

Protein

3 records

下载 Protein FASTA

XP_057802554.1
MPKQRWRKSFKSFIDPSKDEQLRGIKTEIDGNVQKIFSFLKEKDGDDRKEELADLVHDFHKQFESLYARHDHLTGELRNKFRGKSGRDSASSSSDSSDSDDSPAKSGKRNGEVEINIEEKSSVSEREELERKLAAAVDEKEALHQEYQSSVKSKSAEVSLLREENAQLQFRNSEMEKVLTEKESEISDLQKKFGERESESSGRILTLTADVNNLREQLGFMSDQKSEADRIIEKQRGEISEILVQIENLKEELSLAETRN...

XP_057802555.1
MPKQRWRKSFKSFIDPSKDEQLRGIKTEIDGNVQKIFSFLKEKDGDDRKEELADLVHDFHKQFESLYARHDHLTGELRNKFRGKSGRDSASSSSDSSDSDDSPAKSGKRNGEVEINIEEKSSVSEREELERKLAAAVDEKEALHQEYQSSVKSKSAEVSLLREENAQLQFRNSEMEKVLTEKESEISDLQKKFGERESESSGRILTLTADVNNLREQLGFMSDQKSEADRIIEKQRGEISEILVQIENLKEELSLAETRN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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