当前解析结果
SmilChr03G001351| 统一新 Gene ID | SmilChr03G001351 |
|---|---|
| 名称 | SmilChr03G001351 |
| 描述 | putative late blight resistance protein homolog R1B-14 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 15760430 - 15763036 / + |
| NCBI Gene ID | LOC131018447 |
|---|---|
| GeneID | 131018447 |
| locus_tag | - |
| NCBI Name | LOC131018447 |
| 原始查询 | SmilChr03G001351 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1B-14 |
| 产物 | putative late blight resistance protein homolog R1B-14 |
| Arabidopsis | AT1G53350 (AT1G53350)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:841771] identity=26.3; qcov=0.96; evalue=7.03e-65; confidence=low |
| Rice | Os10g0183000 (OsLSR)- identity=30.1; qcov=0.831; evalue=1.15e-70; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018447 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.40000 | XP_057803152.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057803152.1 |
| 3 | Cell membrane | 细胞膜 | 0.40000 | XP_057803152.1 |
| 4 | Nucleus | 细胞核 | 0.20000 | XP_057803152.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057803152.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:15760514 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr3:15760649 |
G |
GA |
1bp_insertion | frameshift_variant | 4 | B110,B139,B65,C60 |
Chr3:15760649 |
G |
GA |
1bp_insertion | CDS_variant | 4 | B110,B139,B65,C60 |
Chr3:15760652 |
A |
AAC |
2bp_insertion | frameshift_variant | 8 | A1,B140,B40,B51,B58,B7,C41,C45 |
Chr3:15760657 |
C |
CG |
1bp_insertion | frameshift_variant | 6 | A1,B140,B40,B58,B7,C41 |
Chr3:15760680 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A1,B40,B58,B7 |
Chr3:15760681 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A1,B40,B58,B7 |
Chr3:15760788 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr3:15760938 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C76 |
Chr3:15760987 |
T |
TA |
1bp_insertion | frameshift_variant | 2 | B113,C48 |
Chr3:15760987 |
T |
TA |
1bp_insertion | CDS_variant | 2 | B113,C48 |
Chr3:15760988 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B124,C27,C60,C68,D4 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803152.1PF00931
NB-ARC 139-308 aa
PF23559
WHD_DRP 387-457 aa
PF23598
LRR_14 512-824 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803152.1 |
Pfam | PF00931 |
NB-ARC | Domain | 139 | 308 | 9.8e-43 | 146.4 | NB-ARC domain |
XP_057803152.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 387 | 457 | 2.3e-18 | 66.7 | Disease resistance protein Winged helix domain |
XP_057803152.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 512 | 824 | 2.1e-22 | 80.1 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。