当前解析结果
SmilChr03G001355| 统一新 Gene ID | SmilChr03G001355 |
|---|---|
| 名称 | SmilChr03G001355 |
| 描述 | uncharacterized SmilChr03G001355 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 15917647 - 15919365 / - |
| NCBI Gene ID | LOC131018450 |
|---|---|
| GeneID | 131018450 |
| locus_tag | - |
| NCBI Name | LOC131018450 |
| 原始查询 | SmilChr03G001355 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629]; symbol=AT2G01050; hit=AT2G01050; species=arabidopsis; confidence=low |
| 产物 | zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629]; symbol=AT2G01050; hit=AT2G01050; species=arabidopsis; confidence=low |
| Arabidopsis | AT2G01050 (AT2G01050)zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629] identity=29.7; qcov=0.318; evalue=3.13e-23; confidence=low |
| Rice | Os12g0156200- identity=22.3; qcov=0.376; evalue=2.72e-07; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018450 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057803154.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057803154.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057803154.1 |
| 4 | Cytoplasmic granule | 细胞质颗粒 | 0.40000 | XP_057803154.1 |
| 5 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 0.40000 | XP_057803154.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:15917721 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C77,C85,D7 |
Chr3:15917751 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A4 |
Chr3:15917791 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A4,C58,C77,C85,D7 |
Chr3:15917823 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | C10,C21,C72 |
Chr3:15917823 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C10,C21,C72 |
Chr3:15917824 |
CG |
C |
1bp_deletion | frameshift_variant | 5 | C13,C58,C77,C85,D7 |
Chr3:15917824 |
CG |
C |
1bp_deletion | CDS_variant | 5 | C13,C58,C77,C85,D7 |
Chr3:15917868 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B1 |
Chr3:15917868 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr3:15917927 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | C13,C58,C77,C85,D7 |
Chr3:15918025 |
CA |
C |
1bp_deletion | frameshift_variant | 73 | A1,A10,A13,A20,A23,A6,A7,A9,B1,B101,B102,B106,B112,B119,B121,B122,B124,B126,B129,B132,B138,B140,B15,B18,B2,B24,B28,B33,B34,B4,B41,B50,B6,B60,B61,B63,B68,B73,B77,B83,B84,B85,B86,B9,B91,C1,C10,C11,C12,C19,C21,C36,C37,C39,C46,C48,C51,C52,C55,C61,C62,C65,C67,C69,C72,C78,C79,C80,C83,C86,D10,D3,D8 |
Chr3:15918044 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B42 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。