Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001366`

染色体: Chr03 坐标: 16006066-16010485 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001366`
名称	SmilChr03G001366
描述	uncharacterized SmilChr03G001366
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	16006066 - 16010485 / `-`

ID 对照

NCBI Gene ID	`LOC131017846`
GeneID	`131017846`
locus_tag	`-`
NCBI Name	`LOC131017846`
原始查询	`SmilChr03G001366`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	GDSL-like Lipase/Acylhydrolase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842122]; symbol=AT1G56670; hit=AT1G56670; species=arabidopsis; confidence=low
产物	GDSL-like Lipase/Acylhydrolase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842122]; symbol=AT1G56670; hit=AT1G56670; species=arabidopsis; confidence=low
Arabidopsis	`AT1G56670` (AT1G56670) GDSL-like Lipase/Acylhydrolase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842122] identity=40.1; qcov=0.34; evalue=1.56e-66; confidence=low
Rice	`Os01g0329900` (OsGELP14) - identity=38.5; qcov=0.336; evalue=1.43e-57; confidence=low
GO	GO:0016788 (hydrolase activity, acting on ester bonds)
KEGG	-
Pfam	PF00657 (Lipase_GDSL); PF09331 (DUF1985); PF29561 (DUF8566)
InterPro	-
eggNOG	-
NR	GeneID:131017846

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.60000	`XP_057802570.1`
2	Cytoplasm	细胞质	0.40000	`XP_057802570.1`
3	Chromosome	染色体	0.00000	`XP_057802570.1`
4	Centromere	着丝粒	0.00000	`XP_057802570.1`
5	Chromatin	染色质	0.00000	`XP_057802570.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:16006326`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C12
`Chr3:16006352`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C12,C60
`Chr3:16006368`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:16006372`	`GT`	`G`	1bp_deletion	frameshift_variant	1	C12
`Chr3:16006372`	`GT`	`G`	1bp_deletion	CDS_variant	1	C12
`Chr3:16006509`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B130,B3,C2,C41,C87
`Chr3:16006536`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B130,C41,C87
`Chr3:16006541`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B125,C73
`Chr3:16006573`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B110
`Chr3:16006573`	`TC`	`T`	1bp_deletion	CDS_variant	1	B110
`Chr3:16006656`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B23,B51,B59
`Chr3:16006671`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C43

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802570.1

865 aa

432

865

DUF1985

DUF8566

Lipase_GDSL

PF09331 DUF1985 86-224 aa PF29561 DUF8566 93-235 aa PF00657 Lipase_GDSL 620-848 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802570.1`	Pfam	`PF09331`	DUF1985	Family	86	224	9.8e-20	71.7	Domain of unknown function (DUF1985)
`XP_057802570.1`	Pfam	`PF29561`	DUF8566	Domain	93	235	8.1e-08	33.0	Domain of unknown function (DUF8566)
`XP_057802570.1`	Pfam	`PF00657`	Lipase_GDSL	Family	620	848	2.3e-27	97.2	GDSL-like Lipase/Acylhydrolase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057946587.1
GATGTCTACGATTAGAAAAAAATGTTTATATTTTGTTAGTTTTATTGTTTGAATACTTTAGTGTTGACATGTATTTCATATGTTGGTTGTGTGCTGATAATTTAGCGCCGATATGTTTAATATGTTTGTGTTGTAATGATATTTAGATTCAAATGCATAATTACACACATAATGTAATGATAAAGTGTGTAAATGATAAAGTGTGTAACTATGATAAAGTGTGTAACTATGCATTTGGTTTTAAAGTGTGTAATCTTTGG...

CDS

1 records

下载 CDS FASTA

LOC131017846
ATGAAAATTTGGTTGATGAATTTTTTTTTATTATATTTTCAGCATGGTCAGTGGACGTATGAACGACGTGAGATGATTGACGTGAAATTTAATGTCAATGTATATTGTCATGAAACAATTCTGGATGATATTAGACATACACTTCTTTCCTTTGGAGATGGAGTATTCAATAAATTTGCTAGGTCATGCTTTGGTCATTTTCTTGGATTGCCTAAACCATTAGGAAAATGCATGCAAGTACTTCATTATGTAATTTCACG...

Protein

1 records

下载 Protein FASTA

XP_057802570.1
MKIWLMNFFLLYFQHGQWTYERREMIDVKFNVNVYCHETILDDIRHTLLSFGDGVFNKFARSCFGHFLGLPKPLGKCMQVLHYVISRQMKFRNEDPSELWFCINGTPIRFSRFEFALVTGLRFGGTSFTPYRRHAMPIDSFYTRVLNNKRILVSDLRDRFIAKDLGLLTEDYVKVAKILFVYNVLFGVEKSKPKHISEWLWVLIEDETTWESFPWGSYAFQKLLHFLKSIKKTTSSGTAKRESYTLFGFSTAFMAWIYCA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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