Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001373`

染色体: Chr03 坐标: 16191921-16196205 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001373`
名称	SmilChr03G001373
描述	uncharacterized SmilChr03G001373
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	16191921 - 16196205 / `+`

ID 对照

NCBI Gene ID	`LOC131017844`
GeneID	`131017844`
locus_tag	`-`
NCBI Name	`LOC131017844`
原始查询	`SmilChr03G001373`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	K-box region protein (DUF1985) [Source:NCBI gene (formerly Entrezgene);Acc:840000]; symbol=AT1G31150; hit=AT1G31150; species=arabidopsis; confidence=weak
产物	K-box region protein (DUF1985) [Source:NCBI gene (formerly Entrezgene);Acc:840000]; symbol=AT1G31150; hit=AT1G31150; species=arabidopsis; confidence=weak
Arabidopsis	`AT1G31150` (AT1G31150) K-box region protein (DUF1985) [Source:NCBI gene (formerly Entrezgene);Acc:840000] identity=27.7; qcov=0.266; evalue=1.38e-12; confidence=weak
Rice	`-` -
GO	GO:0006508 (proteolysis); GO:0008234 (cysteine-type peptidase activity)
KEGG	-
Pfam	PF02902 (Peptidase_C48); PF09331 (DUF1985); PF29561 (DUF8566)
InterPro	-
eggNOG	-
NR	GeneID:131017844

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057802567.1`
2	Chromosome	染色体	0.60000	`XP_057802567.1`
3	Nucleoplasm	核质	0.60000	`XP_057802567.1`
4	Centromere	着丝粒	0.00000	`XP_057802567.1`
5	Chromatin	染色质	0.00000	`XP_057802567.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:16192428`	`A`	`AT`	1bp_insertion	frameshift_variant	3	C14,C44,C59
`Chr3:16192428`	`A`	`AT`	1bp_insertion	CDS_variant	3	C14,C44,C59
`Chr3:16192431`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B138,B139,D3
`Chr3:16192441`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B84
`Chr3:16192443`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A4,B134,C30,C43,C74
`Chr3:16192469`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C14,C44,C59
`Chr3:16192475`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B113,C32
`Chr3:16192478`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A4,B59
`Chr3:16192495`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A4,B59,D3
`Chr3:16192516`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A19,A4,A5,B104,C72
`Chr3:16192518`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B126,B134,D1
`Chr3:16192996`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B44

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802567.1

978 aa

489

978

DUF8566

DUF1985

Peptidase_C48

PF29561 DUF8566 84-273 aa PF09331 DUF1985 118-243 aa PF02902 Peptidase_C48 827-970 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802567.1`	Pfam	`PF29561`	DUF8566	Domain	84	273	9.4e-08	32.8	Domain of unknown function (DUF8566)
`XP_057802567.1`	Pfam	`PF09331`	DUF1985	Family	118	243	3.6e-13	50.4	Domain of unknown function (DUF1985)
`XP_057802567.1`	Pfam	`PF02902`	Peptidase_C48	Domain	827	970	3.6e-14	53.8	Ulp1 protease family, C-terminal catalytic domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057946584.1
TTCTCTTTTTAAGTAGCATTTTTGATAAAATAAATAAGTTAAGTATCAAGGGTCATAAAAAAATAAGTTTTGTAGCACATTTTGACCTAAAGTGAATGATAGTGACATTTTGTCTTATATTGTCTTTACTCTCTCTCTCTCTTTCTCTTTCCACGGTTTCCTTCCACAGCCAAAATTTCGAAATTTTCGGCTTTCCAAGAAAAGTGGTCAAACAAGAATCTTCCATCTTGTCTTCACTGGTACACGGTAGCCCAAAAACC...

CDS

1 records

下载 CDS FASTA

LOC131017844
ATGAGCGATAGTGATACTCAATCCGATTACGATGGGGAAGAGGCACAACATATACAACGTGGAAGTCGCCCGAGTACATCGAGGAGGGAAAAATACCCGACGCCGAATCCGCCTCCGAGGCATTCTTGGTTACGTCCGTGCATGCAAGGTTATGCCGGACGAATCAATCACTATGTAAAGGACACGACACTGAAGGAAGTGGAGACCTGTCTGACGCACTACCAGCGTTTAGAACAATTTAAGAAAGGTCCGTTTGGGCA...

Protein

1 records

下载 Protein FASTA

XP_057802567.1
MSDSDTQSDYDGEEAQHIQRGSRPSTSRREKYPTPNPPPRHSWLRPCMQGYAGRINHYVKDTTLKEVETCLTHYQRLEQFKKGPFGHLLQLKRQDSANAALHHLLARELYDEAFGPWEKWFHVGGHDIRFGAVEYCLVTGLCFGPSPQRFDPNVDHRVGKQSLWHGVLKGKKVEVKDLRKRFVNRSLGNSAQDYLKAANILVAYDLLFCRDYKYVHDWVWALVEEDQKWSDFPWGSYSFQVLCHGMSVLKKHPNEITGNR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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