当前解析结果
SmilChr03G001378| 统一新 Gene ID | SmilChr03G001378 |
|---|---|
| 名称 | SmilChr03G001378 |
| 描述 | uncharacterized SmilChr03G001378 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 16307235 - 16308045 / - |
| NCBI Gene ID | LOC131017860 |
|---|---|
| GeneID | 131017860 |
| locus_tag | - |
| NCBI Name | LOC131017860 |
| 原始查询 | SmilChr03G001378 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Ubiquitin-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817796]; symbol=AT2G32350; hit=AT2G32350; species=arabidopsis; confidence=high |
| 产物 | Ubiquitin-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817796]; symbol=AT2G32350; hit=AT2G32350; species=arabidopsis; confidence=high |
| Arabidopsis | AT2G32350 (AT2G32350)Ubiquitin-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817796] identity=51; qcov=0.948; evalue=7.13e-89; confidence=high |
| Rice | Os04g0628100 (rubi3)- identity=24.6; qcov=0.968; evalue=3.49e-09; confidence=weak |
| GO | GO:0005654 (nucleoplasm); GO:0005829 (cytosol); GO:0031593 (polyubiquitin modification-dependent protein binding); GO:0043130 (ubiquitin binding); GO:0043161 (proteasome-mediated ubiquitin-dependent protein catabolic process); GO:0070628 (proteasome binding) |
| KEGG | - |
| Pfam | PF00240 (ubiquitin); PF14560 (Ubiquitin_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017860 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057802587.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057802587.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057802587.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057802587.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057802587.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:16307314 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C64,C66 |
Chr3:16307405 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B41,B99,C23,C28,C74 |
Chr3:16307438 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A3,B117 |
Chr3:16307527 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B132,C66,C75 |
Chr3:16307555 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C75 |
Chr3:16307568 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A2,B115,B79 |
Chr3:16307618 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:16307667 |
AT |
A |
1bp_deletion | frameshift_variant | 2 | B83,D8 |
Chr3:16307667 |
AT |
A |
1bp_deletion | CDS_variant | 2 | B83,D8 |
Chr3:16307679 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B83,D8 |
Chr3:16307684 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | A9 |
Chr3:16307684 |
TC |
T |
1bp_deletion | CDS_variant | 1 | A9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802587.1PF00240
ubiquitin 7-70 aa
PF14560
Ubiquitin_2 16-46 aa
PF00240
ubiquitin 87-156 aa
PF14560
Ubiquitin_2 92-147 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802587.1 |
Pfam | PF00240 |
ubiquitin | Domain | 7 | 70 | 1.6e-27 | 95.8 | Ubiquitin family |
XP_057802587.1 |
Pfam | PF14560 |
Ubiquitin_2 | Domain | 16 | 46 | 3.4e-08 | 34.5 | Ubiquitin-like domain |
XP_057802587.1 |
Pfam | PF00240 |
ubiquitin | Domain | 87 | 156 | 1.6e-27 | 95.8 | Ubiquitin family |
XP_057802587.1 |
Pfam | PF14560 |
Ubiquitin_2 | Domain | 92 | 147 | 3.4e-08 | 34.5 | Ubiquitin-like domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。