Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G001383

染色体: Chr03 坐标: 16354079-16356884 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G001383
名称SmilChr03G001383
描述putative late blight resistance protein homolog R1B-16
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向16354079 - 16356884 / +

ID 对照

NCBI Gene IDLOC131017850
GeneID131017850
locus_tag-
NCBI NameLOC131017850
原始查询SmilChr03G001383

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述putative late blight resistance protein homolog R1B-16
产物putative late blight resistance protein homolog R1B-16
ArabidopsisAT3G46530 (RPP13)
NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:823806]
identity=30.1; qcov=0.949; evalue=1.09e-76; confidence=low
RiceOs08g0424700 (P0456B03.103)
-
identity=30; qcov=1.05; evalue=9.19e-83; confidence=low
GOGO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG-
PfamPF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro-
eggNOG-
NRGeneID:131017850

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 0.60000 XP_057802576.1
2 Cytosol 细胞质基质 0.40000 XP_057802576.1
3 Cytoplasm 细胞质 0.20000 XP_057802576.1
4 Nucleus 细胞核 0.00000 XP_057802576.1
5 Chromosome 染色体 0.00000 XP_057802576.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:16356490 G A EMS_canonical_SNV CDS_variant 3 A5,B119,B137

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057802576.1
710 aa
N
1
355
710
NB-ARC
WHD_DRP
LRR_14
C
PF00931 NB-ARC 24-195 aa PF23559 WHD_DRP 279-349 aa PF23598 LRR_14 398-586 aa
XP_057802577.1
710 aa
N
1
355
710
NB-ARC
WHD_DRP
LRR_14
C
PF00931 NB-ARC 24-195 aa PF23559 WHD_DRP 279-349 aa PF23598 LRR_14 398-586 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057802576.1 Pfam PF00931 NB-ARC Domain 24 195 5e-47 160.4 NB-ARC domain
XP_057802576.1 Pfam PF23559 WHD_DRP Domain 279 349 2.5e-20 73.0 Disease resistance protein Winged helix domain
XP_057802576.1 Pfam PF23598 LRR_14 Repeat 398 586 9e-19 68.1 Leucine-rich repeat region
XP_057802577.1 Pfam PF00931 NB-ARC Domain 24 195 5e-47 160.4 NB-ARC domain
XP_057802577.1 Pfam PF23559 WHD_DRP Domain 279 349 2.5e-20 73.0 Disease resistance protein Winged helix domain
XP_057802577.1 Pfam PF23598 LRR_14 Repeat 398 586 9e-19 68.1 Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057946593.1
TGCAACGGGTTTCACCGGAGTTTTTATACTTGAGCATTAAAGTATTGAATGAAGCAAATTATTATTCCCTCCATTCCATTGGAAAGAAATTGCTCAAATTTCGTACTACTACTTGGAACAGGTCAATGACTTGAGACTTTAGTCGACCCAGTTGATCTCTGACCCACACTTCTTTCTTCTTCCCATAGAAGAGTTTATGAACTGTATTCGATTTGGGCACTTTTCTGCTCGATGATTTTCCAGCAAATTCAACAGTTTGC...
XM_057946594.1
GCAACGGGTTTCACCGGAGTTTTTATACTTGAGCATTAAAGTATTGAATGAAGCAAATTATTATTCCCTCCATTCCATTGGAAAGAAATTGCTCAAATTTCGTACTACTACTTGGAACAGGTCAATGACTTGAGACTTTAGTCGACCCAGTTGATCTCTGACCCACACTTCTTTCTTCTTCCCATAGAAGAGTTTATGAACTGTATTCGATTTGGGCACTTTTCTGCTCGATGATTTTCCAGCAAATTCAACAGTTTGCT...

CDS

2 records

下载 CDS FASTA
LOC131017850
ATGCGATCCGGTGCTAATCCGCCGTCAAGGCTTGCACCGCCGGCCAAAATCGACGCGATTGGTCTAGAGCCTGATGTTAAAGCGATAACGGAGCGCCTGTTTACAGATTCAAAGGAACTCCACTTCATTCCGATCGTCGGCACCGGCGGAATCGGTAAAACCACTTTGGCTCAAACTATTTATCACGATCCATTAATCGTAGGTAAATTCGATATTCGTGCTTGGGTCACAGTGTCTCAGGATTATAGTTTTGGCGATAT...
LOC131017850
ATGCGATCCGGTGCTAATCCGCCGTCAAGGCTTGCACCGCCGGCCAAAATCGACGCGATTGGTCTAGAGCCTGATGTTAAAGCGATAACGGAGCGCCTGTTTACAGATTCAAAGGAACTCCACTTCATTCCGATCGTCGGCACCGGCGGAATCGGTAAAACCACTTTGGCTCAAACTATTTATCACGATCCATTAATCGTAGGTAAATTCGATATTCGTGCTTGGGTCACAGTGTCTCAGGATTATAGTTTTGGCGATAT...

Protein

2 records

下载 Protein FASTA
XP_057802576.1
MRSGANPPSRLAPPAKIDAIGLEPDVKAITERLFTDSKELHFIPIVGTGGIGKTTLAQTIYHDPLIVGKFDIRAWVTVSQDYSFGDIFKNLLISMKEFVREETSGLSNHEMAEKVYQTLIGRRYLIVIDDMWSEKTWDEVRNYFPDRGDGSRIILTTRLEDVAARADSSKKFHEMKFLGDDDSWDLLKKEVFKGRSYPPTLEKIGRKIAKSCGGLPLAIVVIAGLLSEVSRTEADWEQIANNINLAITAEEEKYAAILSL...
XP_057802577.1
MRSGANPPSRLAPPAKIDAIGLEPDVKAITERLFTDSKELHFIPIVGTGGIGKTTLAQTIYHDPLIVGKFDIRAWVTVSQDYSFGDIFKNLLISMKEFVREETSGLSNHEMAEKVYQTLIGRRYLIVIDDMWSEKTWDEVRNYFPDRGDGSRIILTTRLEDVAARADSSKKFHEMKFLGDDDSWDLLKKEVFKGRSYPPTLEKIGRKIAKSCGGLPLAIVVIAGLLSEVSRTEADWEQIANNINLAITAEEEKYAAILSL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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