当前解析结果
SmilChr03G001396| 统一新 Gene ID | SmilChr03G001396 |
|---|---|
| 名称 | SmilChr03G001396 |
| 描述 | receptor kinase-like protein Xa21 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 16581842 - 16589213 / + |
| NCBI Gene ID | LOC131017842 |
|---|---|
| GeneID | 131017842 |
| locus_tag | - |
| NCBI Name | LOC131017842 |
| 原始查询 | SmilChr03G001396 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor kinase-like protein Xa21 |
| 产物 | receptor kinase-like protein Xa21 |
| Arabidopsis | AT3G47570 (AT3G47570)Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:823911] identity=35.6; qcov=1.03; evalue=4.94e-152; confidence=medium |
| Rice | Os11g0490200- identity=38.4; qcov=1.05; evalue=1.93e-173; confidence=medium |
| GO | GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13855 (LRR_8); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017842 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057802562.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057802562.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057802562.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057802562.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057802562.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:16583024 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A20,B122,D3 |
Chr3:16583071 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | B137,C19,C67 |
Chr3:16583071 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B137,C19,C67 |
Chr3:16583087 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C42,C60 |
Chr3:16583103 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C42 |
Chr3:16584149 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A25,B106,B110,B45,C70 |
Chr3:16584231 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B98,C14 |
Chr3:16584241 |
C |
T |
EMS_canonical_SNV | stop_gained | 48 | A19,A5,B100,B102,B109,B121,B122,B124,B127,B128,B130,B139,B18,B29,B31,B32,B37,B4,B54,B55,B56,B61,B62,B63,B66,B7,B75,B76,B79,B87,B88,B9,B90,B94,B95,B96,C29,C40,C43,C44,C62,C63,C77,C79,C8,C81,C85,C9 |
Chr3:16584298 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A7,B80 |
Chr3:16584328 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr3:16584390 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B85 |
Chr3:16584455 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B33,B59 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057802562.1PF08263
LRRNT_2 32-66 aa
PF23598
LRR_14 84-200 aa
PF00560
LRR_1 97-117 aa
PF13855
LRR_8 97-156 aa
PF00560
LRR_1 121-142 aa
PF00560
LRR_1 145-167 aa
PF13855
LRR_8 145-203 aa
PF00560
LRR_1 169-191 aa
PF00560
LRR_1 217-239 aa
PF13855
LRR_8 278-333 aa
PF00560
LRR_1 353-374 aa
PF00560
LRR_1 506-528 aa
PF00560
LRR_1 530-550 aa
PF13855
LRR_8 547-589 aa
PF00560
LRR_1 555-575 aa
PF00069
Pkinase 687-956 aa
PF07714
PK_Tyr_Ser-Thr 690-888 aa
XP_057802563.1PF08263
LRRNT_2 32-66 aa
PF23598
LRR_14 84-200 aa
PF00560
LRR_1 97-117 aa
PF13855
LRR_8 97-156 aa
PF00560
LRR_1 121-142 aa
PF00560
LRR_1 145-167 aa
PF13855
LRR_8 145-203 aa
PF00560
LRR_1 169-191 aa
PF00560
LRR_1 217-239 aa
PF13855
LRR_8 278-333 aa
PF00560
LRR_1 353-374 aa
PF00560
LRR_1 506-528 aa
PF00560
LRR_1 530-550 aa
PF13855
LRR_8 547-589 aa
PF00560
LRR_1 555-575 aa
PF00069
Pkinase 687-956 aa
PF07714
PK_Tyr_Ser-Thr 690-888 aa
XP_057802564.1PF08263
LRRNT_2 32-66 aa
PF23598
LRR_14 84-200 aa
PF00560
LRR_1 97-117 aa
PF13855
LRR_8 97-156 aa
PF00560
LRR_1 121-142 aa
PF00560
LRR_1 145-167 aa
PF13855
LRR_8 145-203 aa
PF00560
LRR_1 169-191 aa
PF00560
LRR_1 217-239 aa
PF13855
LRR_8 278-333 aa
PF00560
LRR_1 353-374 aa
PF00560
LRR_1 506-528 aa
PF00560
LRR_1 530-550 aa
PF13855
LRR_8 547-589 aa
PF00560
LRR_1 555-575 aa
PF00069
Pkinase 687-956 aa
PF07714
PK_Tyr_Ser-Thr 690-888 aa
XP_057802565.1PF23598
LRR_14 8-119 aa
PF00560
LRR_1 16-36 aa
PF13855
LRR_8 16-75 aa
PF00560
LRR_1 40-61 aa
PF00560
LRR_1 64-86 aa
PF13855
LRR_8 64-122 aa
PF00560
LRR_1 88-110 aa
PF13855
LRR_8 88-147 aa
PF00560
LRR_1 136-158 aa
PF13855
LRR_8 197-252 aa
PF00560
LRR_1 272-293 aa
PF00560
LRR_1 425-447 aa
PF00560
LRR_1 449-469 aa
PF13855
LRR_8 466-508 aa
PF00560
LRR_1 474-494 aa
PF00069
Pkinase 606-875 aa
PF07714
PK_Tyr_Ser-Thr 609-807 aa
XP_057802566.1PF08263
LRRNT_2 32-66 aa
PF23598
LRR_14 84-200 aa
PF00560
LRR_1 97-117 aa
PF13855
LRR_8 97-156 aa
PF00560
LRR_1 121-142 aa
PF00560
LRR_1 145-167 aa
PF13855
LRR_8 145-203 aa
PF00560
LRR_1 169-191 aa
PF00560
LRR_1 217-239 aa
PF13855
LRR_8 278-333 aa
PF00560
LRR_1 353-374 aa
PF00560
LRR_1 404-426 aa
PF00560
LRR_1 506-528 aa
PF00560
LRR_1 530-550 aa
PF13855
LRR_8 547-589 aa
PF00560
LRR_1 555-575 aa
PF00069
Pkinase 687-855 aa
PF07714
PK_Tyr_Ser-Thr 690-854 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802562.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 32 | 66 | 1e-06 | 29.6 | Leucine rich repeat N-terminal domain |
XP_057802562.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 84 | 200 | 7.5e-38 | 130.9 | Leucine-rich repeat region |
XP_057802562.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 97 | 117 | 1.7e-45 | 143.9 | Leucine Rich Repeat |
XP_057802562.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 97 | 156 | 8.2e-46 | 154.3 | Leucine rich repeat |
XP_057802562.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 121 | 142 | 1.7e-45 | 143.9 | Leucine Rich Repeat |
XP_057802562.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 145 | 167 | 1.7e-45 | 143.9 | Leucine Rich Repeat |
XP_057802562.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 145 | 203 | 8.2e-46 | 154.3 | Leucine rich repeat |
XP_057802562.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 169 | 191 | 1.7e-45 | 143.9 | Leucine Rich Repeat |
XP_057802562.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 217 | 239 | 1.7e-45 | 143.9 | Leucine Rich Repeat |
XP_057802562.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 278 | 333 | 8.2e-46 | 154.3 | Leucine rich repeat |
XP_057802562.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 353 | 374 | 1.7e-45 | 143.9 | Leucine Rich Repeat |
XP_057802562.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 506 | 528 | 1.7e-45 | 143.9 | Leucine Rich Repeat |
XP_057802562.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 530 | 550 | 1.7e-45 | 143.9 | Leucine Rich Repeat |
XP_057802562.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 547 | 589 | 8.2e-46 | 154.3 | Leucine rich repeat |
XP_057802562.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 555 | 575 | 1.7e-45 | 143.9 | Leucine Rich Repeat |
XP_057802562.1 |
Pfam | PF00069 |
Pkinase | Domain | 687 | 956 | 4.4e-40 | 138.4 | Protein kinase domain |
XP_057802562.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 690 | 888 | 2.2e-37 | 129.5 | Protein tyrosine and serine/threonine kinase |
XP_057802563.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 32 | 66 | 1e-06 | 29.6 | Leucine rich repeat N-terminal domain |
XP_057802563.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 84 | 200 | 7.5e-38 | 130.9 | Leucine-rich repeat region |
XP_057802563.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 97 | 117 | 1.7e-45 | 143.9 | Leucine Rich Repeat |
XP_057802563.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 97 | 156 | 8.2e-46 | 154.3 | Leucine rich repeat |
XP_057802563.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 121 | 142 | 1.7e-45 | 143.9 | Leucine Rich Repeat |
XP_057802563.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 145 | 167 | 1.7e-45 | 143.9 | Leucine Rich Repeat |
XP_057802563.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 145 | 203 | 8.2e-46 | 154.3 | Leucine rich repeat |
XP_057802563.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 169 | 191 | 1.7e-45 | 143.9 | Leucine Rich Repeat |
XP_057802563.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 217 | 239 | 1.7e-45 | 143.9 | Leucine Rich Repeat |
XP_057802563.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 278 | 333 | 8.2e-46 | 154.3 | Leucine rich repeat |
XP_057802563.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 353 | 374 | 1.7e-45 | 143.9 | Leucine Rich Repeat |
XP_057802563.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 506 | 528 | 1.7e-45 | 143.9 | Leucine Rich Repeat |
XP_057802563.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 530 | 550 | 1.7e-45 | 143.9 | Leucine Rich Repeat |
XP_057802563.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 547 | 589 | 8.2e-46 | 154.3 | Leucine rich repeat |
XP_057802563.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 555 | 575 | 1.7e-45 | 143.9 | Leucine Rich Repeat |
XP_057802563.1 |
Pfam | PF00069 |
Pkinase | Domain | 687 | 956 | 4.4e-40 | 138.4 | Protein kinase domain |
XP_057802563.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 690 | 888 | 2.2e-37 | 129.5 | Protein tyrosine and serine/threonine kinase |
XP_057802564.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 32 | 66 | 1e-06 | 29.6 | Leucine rich repeat N-terminal domain |
XP_057802564.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 84 | 200 | 7.5e-38 | 130.9 | Leucine-rich repeat region |
XP_057802564.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 97 | 117 | 1.7e-45 | 143.9 | Leucine Rich Repeat |
XP_057802564.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 97 | 156 | 8.2e-46 | 154.3 | Leucine rich repeat |
XP_057802564.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 121 | 142 | 1.7e-45 | 143.9 | Leucine Rich Repeat |
XP_057802564.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 145 | 167 | 1.7e-45 | 143.9 | Leucine Rich Repeat |
XP_057802564.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 145 | 203 | 8.2e-46 | 154.3 | Leucine rich repeat |
XP_057802564.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 169 | 191 | 1.7e-45 | 143.9 | Leucine Rich Repeat |
XP_057802564.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 217 | 239 | 1.7e-45 | 143.9 | Leucine Rich Repeat |
XP_057802564.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 278 | 333 | 8.2e-46 | 154.3 | Leucine rich repeat |
XP_057802564.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 353 | 374 | 1.7e-45 | 143.9 | Leucine Rich Repeat |
XP_057802564.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 506 | 528 | 1.7e-45 | 143.9 | Leucine Rich Repeat |
XP_057802564.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 530 | 550 | 1.7e-45 | 143.9 | Leucine Rich Repeat |
XP_057802564.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 547 | 589 | 8.2e-46 | 154.3 | Leucine rich repeat |
XP_057802564.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 555 | 575 | 1.7e-45 | 143.9 | Leucine Rich Repeat |
XP_057802564.1 |
Pfam | PF00069 |
Pkinase | Domain | 687 | 956 | 4.4e-40 | 138.4 | Protein kinase domain |
XP_057802564.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 690 | 888 | 2.2e-37 | 129.5 | Protein tyrosine and serine/threonine kinase |
XP_057802565.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 8 | 119 | 8.7e-38 | 130.7 | Leucine-rich repeat region |
XP_057802565.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 16 | 36 | 2.3e-45 | 143.4 | Leucine Rich Repeat |
XP_057802565.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 16 | 75 | 1e-45 | 154.0 | Leucine rich repeat |
XP_057802565.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 40 | 61 | 2.3e-45 | 143.4 | Leucine Rich Repeat |
XP_057802565.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 64 | 86 | 2.3e-45 | 143.4 | Leucine Rich Repeat |
XP_057802565.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 64 | 122 | 1e-45 | 154.0 | Leucine rich repeat |
XP_057802565.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 88 | 110 | 2.3e-45 | 143.4 | Leucine Rich Repeat |
XP_057802565.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 88 | 147 | 1e-45 | 154.0 | Leucine rich repeat |
XP_057802565.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 136 | 158 | 2.3e-45 | 143.4 | Leucine Rich Repeat |
XP_057802565.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 197 | 252 | 1e-45 | 154.0 | Leucine rich repeat |
XP_057802565.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 272 | 293 | 2.3e-45 | 143.4 | Leucine Rich Repeat |
XP_057802565.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 425 | 447 | 2.3e-45 | 143.4 | Leucine Rich Repeat |
XP_057802565.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 449 | 469 | 2.3e-45 | 143.4 | Leucine Rich Repeat |
XP_057802565.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 466 | 508 | 1e-45 | 154.0 | Leucine rich repeat |
XP_057802565.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 474 | 494 | 2.3e-45 | 143.4 | Leucine Rich Repeat |
XP_057802565.1 |
Pfam | PF00069 |
Pkinase | Domain | 606 | 875 | 3.8e-40 | 138.7 | Protein kinase domain |
XP_057802565.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 609 | 807 | 1.9e-37 | 129.7 | Protein tyrosine and serine/threonine kinase |
XP_057802566.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 32 | 66 | 8.2e-07 | 29.9 | Leucine rich repeat N-terminal domain |
XP_057802566.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 84 | 200 | 2.3e-38 | 132.6 | Leucine-rich repeat region |
XP_057802566.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 97 | 117 | 2e-47 | 149.6 | Leucine Rich Repeat |
XP_057802566.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 97 | 156 | 1.7e-46 | 156.5 | Leucine rich repeat |
XP_057802566.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 121 | 142 | 2e-47 | 149.6 | Leucine Rich Repeat |
XP_057802566.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 145 | 167 | 2e-47 | 149.6 | Leucine Rich Repeat |
XP_057802566.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 145 | 203 | 1.7e-46 | 156.5 | Leucine rich repeat |
XP_057802566.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 169 | 191 | 2e-47 | 149.6 | Leucine Rich Repeat |
XP_057802566.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 217 | 239 | 2e-47 | 149.6 | Leucine Rich Repeat |
XP_057802566.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 278 | 333 | 1.7e-46 | 156.5 | Leucine rich repeat |
XP_057802566.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 353 | 374 | 2e-47 | 149.6 | Leucine Rich Repeat |
XP_057802566.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 404 | 426 | 2e-47 | 149.6 | Leucine Rich Repeat |
XP_057802566.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 506 | 528 | 2e-47 | 149.6 | Leucine Rich Repeat |
XP_057802566.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 530 | 550 | 2e-47 | 149.6 | Leucine Rich Repeat |
XP_057802566.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 547 | 589 | 1.7e-46 | 156.5 | Leucine rich repeat |
XP_057802566.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 555 | 575 | 2e-47 | 149.6 | Leucine Rich Repeat |
XP_057802566.1 |
Pfam | PF00069 |
Pkinase | Domain | 687 | 855 | 2.9e-31 | 109.6 | Protein kinase domain |
XP_057802566.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 690 | 854 | 9.5e-27 | 94.6 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
5 records
下载 cDNA FASTA5 records
下载 CDS FASTA5 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。