当前解析结果
SmilChr03G001405| 统一新 Gene ID | SmilChr03G001405 |
|---|---|
| 名称 | SmilChr03G001405 |
| 描述 | uncharacterized SmilChr03G001405 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 16634872 - 16638092 / - |
| NCBI Gene ID | LOC131017863 |
|---|---|
| GeneID | 131017863 |
| locus_tag | - |
| NCBI Name | LOC131017863 |
| 原始查询 | SmilChr03G001405 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ER membrane protein complex subunit-like protein (Protein of unknown function DUF106, transmembrane) [Source:NCBI gene (formerly Entrezgene);Acc:826872]; symbol=AT4G12590; hit=AT4G12590; species=arabidopsis; confidence=high |
| 产物 | ER membrane protein complex subunit-like protein (Protein of unknown function DUF106, transmembrane) [Source:NCBI gene (formerly Entrezgene);Acc:826872]; symbol=AT4G12590; hit=AT4G12590; species=arabidopsis; confidence=high |
| Arabidopsis | AT4G12590 (AT4G12590)ER membrane protein complex subunit-like protein (Protein of unknown function DUF106, transmembrane) [Source:NCBI gene (formerly Entrezgene);Acc:826872] identity=91.2; qcov=0.891; evalue=5.85e-74; confidence=high |
| Rice | Os09g0497400- identity=91.9; qcov=0.773; evalue=3.27e-64; confidence=high |
| GO | GO:0016020 (membrane); GO:0034975 (protein folding in endoplasmic reticulum); GO:0072546 (EMC complex) |
| KEGG | - |
| Pfam | PF01956 (EMC3_TMCO1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017863 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057802593.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057802593.1 |
| 3 | Golgi apparatus | 高尔基体 | 0.20000 | XP_057802593.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057802593.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057802593.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:16635870 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
Chr3:16635914 |
G |
A |
EMS_canonical_SNV | stop_gained | 5 | B50,B63,B73,B83,C86 |
Chr3:16635914 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B50,B63,B73,B83,C86 |
Chr3:16635926 |
G |
A |
EMS_canonical_SNV | stop_gained | 13 | B131,B140,B49,B50,B63,B73,B78,B80,B83,C3,C39,C86,D7 |
Chr3:16636274 |
CG |
C |
1bp_deletion | frameshift_variant | 5 | A3,B100,B56,C83,D5 |
Chr3:16636274 |
CG |
C |
1bp_deletion | CDS_variant | 5 | A3,B100,B56,C83,D5 |
Chr3:16636301 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A1,A21,B70,B76,C55 |
Chr3:16636323 |
G |
A |
EMS_canonical_SNV | stop_gained | 12 | B109,B11,B114,B127,B139,B40,B44,B73,B85,C21,C60,C61 |
Chr3:16636327 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B50,B66 |
Chr3:16636331 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A10,D1 |
Chr3:16636363 |
CT |
C |
1bp_deletion | frameshift_variant | 5 | B14,B59,B74,C22,C30 |
Chr3:16636363 |
CT |
C |
1bp_deletion | CDS_variant | 5 | B14,B59,B74,C22,C30 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802593.1PF01956
EMC3_TMCO1 6-92 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802593.1 |
Pfam | PF01956 |
EMC3_TMCO1 | Family | 6 | 92 | 1.2e-32 | 113.7 | Integral membrane protein EMC3/TMCO1-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。