Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001407`

染色体: Chr03 坐标: 16670621-16674981 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001407`
名称	SmilChr03G001407
描述	uncharacterized SmilChr03G001407
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	16670621 - 16674981 / `+`

ID 对照

NCBI Gene ID	`LOC131017848`
GeneID	`131017848`
locus_tag	`-`
NCBI Name	`LOC131017848`
原始查询	`SmilChr03G001407`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os02g0258300; species=rice; confidence=low
产物	hit=Os02g0258300; species=rice; confidence=low
Arabidopsis	`AT2G46380` (AT2G46380) extra-large G-like protein, putative (DUF3133) [Source:NCBI gene (formerly Entrezgene);Acc:819246] identity=33.2; qcov=0.942; evalue=2.17e-85; confidence=low
Rice	`Os02g0258300` - identity=34.1; qcov=1.01; evalue=1.74e-101; confidence=low
GO	GO:1900150 (regulation of defense response to fungus)
KEGG	-
Pfam	PF11331 (Zn_ribbon_12)
InterPro	-
eggNOG	-
NR	GeneID:131017848

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.60000	`XP_057802572.1`
2	Cell membrane	细胞膜	0.40000	`XP_057802572.1`
3	Nucleus	细胞核	0.20000	`XP_057802572.1`
4	Cytosol	细胞质基质	0.20000	`XP_057802572.1`
5	Chromosome	染色体	0.00000	`XP_057802572.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:16671771`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B19,B46,B82,D4
`Chr3:16671777`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B19,B40,B46,B82,D4
`Chr3:16671921`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B101,B113,B9,C62
`Chr3:16671932`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr3:16672012`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:16672247`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B74
`Chr3:16672255`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:16672380`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B105,B133,B42,B43
`Chr3:16672385`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B140,B98,C14
`Chr3:16672400`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B114,B137,C19
`Chr3:16672492`	`CAG`	`C`	2bp_deletion	frameshift_variant	8	B128,B130,B29,B37,B95,C29,C54,C79
`Chr3:16672522`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A5,B35,C58,D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802572.1

722 aa

361

722

Zn_ribbon_12

PF11331 Zn_ribbon_12 309-353 aa

XP_057802573.1

722 aa

361

722

Zn_ribbon_12

PF11331 Zn_ribbon_12 309-353 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802572.1`	Pfam	`PF11331`	Zn_ribbon_12	Domain	309	353	2.6e-18	66.2	EDR4 zinc-ribbon domain
`XP_057802573.1`	Pfam	`PF11331`	Zn_ribbon_12	Domain	309	353	2.6e-18	66.2	EDR4 zinc-ribbon domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057946589.1
TCTTGAATGCGACTGTTCACTAATCAAATCTCATTGACTTGTTTATTTAATCATTTTTTAGTGAGTTGAGGTTTGTGCACGGATGATCCGCCGCTTGGATCCAATACCTTTTTTTAGGGAATTGCTTATTGAGATATTCTCGTTTGTACTCTGATTTGGTGGAGTGTAATGACAGAATCCAGACATAAATTACAGATTTAGAAATAAATATGTTTTCTTAGTCAACTACTTGCAGTTGAAAAATTAAAGAAAATGGCATT...

XM_057946590.1
TCTTGAATGCGACTGTTCACTAATCAAATCTCATTGACTTGTTTATTTAATCATTTTTTAGTGAGTTGAGGTTTGTGCACGGATGATCCGCCGCTTGGATCCAATACCTTTTTTTAGGGAATTGCTTATTGAGATATTCTCGTTTGTACTCTGATTTGGTGGAGTGTAATGACAGAATCCAGACATAAATTACAGATTTAGAAATAAATATGTTTTCTTAGTCAACTACTTGCAGTTGAAAAATTAAAGAAAATGGCATT...

CDS

2 records

下载 CDS FASTA

LOC131017848
ATGGACCAAAGGCGTGTGATTGGTAAGGGGCCAGTGTTTTCTTCTTCGCCTGCCAGAGGAGCTCCTGGACAGGGGAGAGACGATTATTATCTCCATCGTGATCAAGGGCCGTCTAGTTACAACGAGAACTCTTATTATGAGCAGGGTGAGGAGGCAAGAAGATATATGAATCATGAAATGGATGGGCCATCCAGGTTTGAGAATCTGGAGAATTGTCGGGCTGAGCTCCTACGGAAACTTGATGAGTTGAAGGATCATCT...

Protein

2 records

下载 Protein FASTA

XP_057802572.1
MDQRRVIGKGPVFSSSPARGAPGQGRDDYYLHRDQGPSSYNENSYYEQGEEARRYMNHEMDGPSRFENLENCRAELLRKLDELKDHLTRSCEVTEKPGHRMGTDMIVNDPYPRNRAAYLQEALPTSHGVYQQPLALDEKAHHPHIGLGPGYVPFADRDAHFRRGYQHEGSSYANTYQQEMPQGPYGHPQSKYLHQPYHDRRHGYGGSLNHLDENFIHSPTCSCVHCFDKDWDLPPHVLSNPNYHHHTYPVGHGPQGYRPG...

XP_057802573.1
MDQRRVIGKGPVFSSSPARGAPGQGRDDYYLHRDQGPSSYNENSYYEQGEEARRYMNHEMDGPSRFENLENCRAELLRKLDELKDHLTRSCEVTEKPGHRMGTDMIVNDPYPRNRAAYLQEALPTSHGVYQQPLALDEKAHHPHIGLGPGYVPFADRDAHFRRGYQHEGSSYANTYQQEMPQGPYGHPQSKYLHQPYHDRRHGYGGSLNHLDENFIHSPTCSCVHCFDKDWDLPPHVLSNPNYHHHTYPVGHGPQGYRPG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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