当前解析结果
SmilChr03G001408| 统一新 Gene ID | SmilChr03G001408 |
|---|---|
| 名称 | SmilChr03G001408 |
| 描述 | putative disease resistance protein RGA3 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 16715615 - 16718826 / + |
| NCBI Gene ID | LOC131017884 |
|---|---|
| GeneID | 131017884 |
| locus_tag | - |
| NCBI Name | LOC131017884 |
| 原始查询 | SmilChr03G001408 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative disease resistance protein RGA3 |
| 产物 | putative disease resistance protein RGA3 |
| Arabidopsis | AT3G14470 (AT3G14470)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:820670] identity=28.8; qcov=1; evalue=2.78e-97; confidence=low |
| Rice | Os05g0492200 (YR1)- identity=31.2; qcov=0.959; evalue=3.2e-124; confidence=low |
| GO | GO:0005515 (protein binding); GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF13855 (LRR_8); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14); PF25019 (LRR_R13L1-DRL21) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017884 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057802600.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057802600.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057802600.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057802600.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057802600.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:16715728 |
G |
GGT |
2bp_insertion | frameshift_variant | 10 | A7,B131,B20,B21,B23,B36,B83,C49,C53,C59 |
Chr3:16715742 |
ATC |
A |
2bp_deletion | frameshift_variant | 4 | B41,B67,C4,C46 |
Chr3:16715742 |
ATC |
A |
2bp_deletion | CDS_variant | 4 | B41,B67,C4,C46 |
Chr3:16715745 |
A |
AGG |
2bp_insertion | frameshift_variant | 4 | B41,B67,C4,C46 |
Chr3:16715745 |
A |
AGG |
2bp_insertion | CDS_variant | 4 | B41,B67,C4,C46 |
Chr3:16716094 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A19,A23,A9,B30 |
Chr3:16716502 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A4 |
Chr3:16716740 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A19,A23,B30,C53 |
Chr3:16717082 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B95 |
Chr3:16717082 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B95 |
Chr3:16717084 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B95 |
Chr3:16717084 |
AC |
A |
1bp_deletion | CDS_variant | 1 | B95 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802600.1PF18052
Rx_N 22-102 aa
PF00931
NB-ARC 190-354 aa
PF23559
WHD_DRP 438-509 aa
PF13855
LRR_8 605-660 aa
PF23598
LRR_14 621-908 aa
PF25019
LRR_R13L1-DRL21 715-841 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802600.1 |
Pfam | PF18052 |
Rx_N | Domain | 22 | 102 | 8.9e-17 | 61.7 | Rx N-terminal domain |
XP_057802600.1 |
Pfam | PF00931 |
NB-ARC | Domain | 190 | 354 | 2.3e-35 | 122.4 | NB-ARC domain |
XP_057802600.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 438 | 509 | 2.7e-18 | 66.5 | Disease resistance protein Winged helix domain |
XP_057802600.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 605 | 660 | 1.9e-07 | 31.5 | Leucine rich repeat |
XP_057802600.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 621 | 908 | 4.8e-26 | 92.1 | Leucine-rich repeat region |
XP_057802600.1 |
Pfam | PF25019 |
LRR_R13L1-DRL21 | Repeat | 715 | 841 | 3.6e-32 | 111.7 | R13L1/DRL21 LRRs |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。