Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001420`

染色体: Chr03 坐标: 16820699-16825455 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001420`
名称	SmilChr03G001420
描述	phytyl ester synthase 1, chloroplastic-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	16820699 - 16825455 / `-`

ID 对照

NCBI Gene ID	`LOC131017892`
GeneID	`131017892`
locus_tag	`-`
NCBI Name	`LOC131017892`
原始查询	`SmilChr03G001420`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	phytyl ester synthase 1, chloroplastic-like
产物	phytyl ester synthase 1%2C chloroplastic-like
Arabidopsis	`AT1G54570` (PES1) Esterase/lipase/thioesterase family protein [Source:NCBI gene (formerly Entrezgene);Acc:841899] identity=54.7; qcov=0.919; evalue=0; confidence=high
Rice	`Os01g0362100` - identity=54.4; qcov=0.935; evalue=0; confidence=high
GO	GO:0008374 (GO:0008374); GO:0016020 (membrane)
KEGG	smil00073 (Cutin, suberine and wax biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00561 (Glycerolipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF03982 (DAGAT); PF12146 (Hydrolase_4)
InterPro	-
eggNOG	-
NR	GeneID:131017892

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057802611.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057802611.1`
3	Chloroplast membrane	叶绿体膜	0.60000	`XP_057802611.1`
4	Nucleus	细胞核	0.00000	`XP_057802611.1`
5	Chromosome	染色体	0.00000	`XP_057802611.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:16821097`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B1,B68
`Chr3:16821101`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B26
`Chr3:16821125`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr3:16821135`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A9,B110,B45,D6
`Chr3:16821180`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C79
`Chr3:16821199`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C66
`Chr3:16821265`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr3:16821816`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B68
`Chr3:16821816`	`TC`	`T`	1bp_deletion	CDS_variant	1	B68
`Chr3:16821961`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr3:16821974`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B74,C77,D7
`Chr3:16822019`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B21,C25,C3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802611.1

689 aa

344

689

Hydrolase_4

DAGAT

PF12146 Hydrolase_4 155-354 aa PF03982 DAGAT 483-561 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802611.1`	Pfam	`PF12146`	Hydrolase_4	Domain	155	354	9.6e-08	32.3	Serine aminopeptidase, S33
`XP_057802611.1`	Pfam	`PF03982`	DAGAT	Family	483	561	2.3e-06	27.5	Diacylglycerol acyltransferase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XR_009099915.1
CTTTGATTCATTCACCTTTTATTAAGGCATGTTTTGAGCAAAGCTACAATTTCCGTTCCAACTAAAAATCTTCCACATCTAAAATTTATCATCACAATCTTTATGTGAGGCACAAGCAAATGTGGCAAAGCTGCTTTCCTCAACAAACAAACTTCCTCTCTTCCCAAAACTTGGACTTGTGCAAACACTTGAGTGAATGAATGAATAGTGTTGAAAACTCCCATCAAAATCTGCAGCTAAATCCCAATGCAAGCAAACAC...

XM_057946628.1
TTCCAACTAAAAATCTTCCACATCTAAAATTTATCATCACAATCTTTATGTGAGGCACAAGCAAATGTGGCAAAGCTGCTTTCCTCAACAAACAAACTTCCTCTCTTCCCAAAACTTGGACTTGTGCAAACACTTGAGTGAATGAATGAATAGTGTTGAAAACTCCCATCAAAATCTGCAGCTAAATCCCAATGCAAGCAAACACGATGATGAGACTCTGCACATCGCCTCCGACCTCGCTGCACGATCCAAGACCGTCA...

CDS

1 records

下载 CDS FASTA

LOC131017892
ATGCAAGCAAACACGATGATGAGACTCTGCACATCGCCTCCGACCTCGCTGCACGATCCAAGACCGTCACACAAGTCATCGAAAAACCCCATCAAAATTCGCCTTGAAGCAAACTCAATCCGCTTATCGCCTCCGACCTCGCTTCACAGGTCATCGACAGTAGCCGCTGCAACGAGGGAGAAGGAACTGAAGCCCCTGTGGGACGACGGGTACGGGACTCAGACAGCGAGGGACTACATTCAAGCAAGTACTAAACTTAT...

Protein

1 records

下载 Protein FASTA

XP_057802611.1
MQANTMMRLCTSPPTSLHDPRPSHKSSKNPIKIRLEANSIRLSPPTSLHRSSTVAAATREKELKPLWDDGYGTQTARDYIQASTKLMINSDGGPPRWFCPSEAGPPLDDSPPLLYLPGIDGVGMGMVLHHKAMGKVFRVRCMQVPAEDRTPYEELVEFVGEAVEAEHASSPGMPIYLLGDSFGACLALSVAAANPAPDIVLILVNPATSFDRSQLQPLLPFLEIIPEKLLPCLLAATCGDPIKMASVSNAAKTWIPPAKH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器