当前解析结果
SmilChr03G001427| 统一新 Gene ID | SmilChr03G001427 |
|---|---|
| 名称 | SmilChr03G001427 |
| 描述 | probable inactive receptor kinase RLK902 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 16906026 - 16907941 / + |
| NCBI Gene ID | LOC131017899 |
|---|---|
| GeneID | 131017899 |
| locus_tag | - |
| NCBI Name | LOC131017899 |
| 原始查询 | SmilChr03G001427 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable inactive receptor kinase RLK902 |
| 产物 | probable inactive receptor kinase RLK902 |
| Arabidopsis | AT3G17840 (RLK902)receptor-like kinase 902 [Source:NCBI gene (formerly Entrezgene);Acc:821053] identity=37.9; qcov=0.658; evalue=3.2e-34; confidence=medium |
| Rice | Os03g0223000 (OsRLCK377)- identity=36.6; qcov=0.655; evalue=4.92e-33; confidence=medium |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017899 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057802619.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057802619.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057802619.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057802619.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057802619.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:16906253 |
CG |
C |
1bp_deletion | frameshift_variant | 1 | B72 |
Chr3:16906253 |
CG |
C |
1bp_deletion | CDS_variant | 1 | B72 |
Chr3:16906274 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C47 |
Chr3:16906304 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B99 |
Chr3:16906604 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr3:16907609 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B117,C53 |
Chr3:16907650 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A22,C27 |
Chr3:16907653 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A19,A23,B30,B54 |
Chr3:16907656 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B75,B97 |
Chr3:16907698 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A19,A23,B30,B54 |
Chr3:16907719 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B102,B108,C23 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057802619.1PF00069
Pkinase 65-256 aa
PF07714
PK_Tyr_Ser-Thr 100-312 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802619.1 |
Pfam | PF00069 |
Pkinase | Domain | 65 | 256 | 6.4e-12 | 46.1 | Protein kinase domain |
XP_057802619.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 100 | 312 | 1.6e-14 | 54.5 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。