当前解析结果
SmilChr03G001434| 统一新 Gene ID | SmilChr03G001434 |
|---|---|
| 名称 | SmilChr03G001434 |
| 描述 | CBL-interacting serine/threonine-protein kinase 12-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 17026095 - 17027142 / + |
| NCBI Gene ID | LOC131018472 |
|---|---|
| GeneID | 131018472 |
| locus_tag | - |
| NCBI Name | LOC131018472 |
| 原始查询 | SmilChr03G001434 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | CBL-interacting serine/threonine-protein kinase 12-like |
| 产物 | CBL-interacting serine/threonine-protein kinase 12-like |
| Arabidopsis | AT4G18700 (CIPK12)CBL-interacting protein kinase 12 [Source:NCBI gene (formerly Entrezgene);Acc:827604] identity=76.9; qcov=0.801; evalue=4.91e-89; confidence=high |
| Rice | Os05g0332300 (OsCIPK18)- identity=73.5; qcov=0.718; evalue=4.88e-81; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF01163 (RIO1); PF03109 (ABC1); PF06293 (Kdo); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018472 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057803174.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057803174.1 |
| 3 | Nucleus | 细胞核 | 0.60000 | XP_057803174.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057803174.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057803174.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:17026104 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A14,D5 |
Chr3:17026120 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D1 |
Chr3:17026135 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B120,B138 |
Chr3:17026164 |
C |
T |
EMS_canonical_SNV | stop_gained | 8 | B21,B77,B90,B99,C26,C28,C47,C75 |
Chr3:17026224 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B97,C25 |
Chr3:17026359 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B49,B87 |
Chr3:17026360 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr3:17026427 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
Chr3:17026584 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C13 |
Chr3:17026617 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:17026622 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B21 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803174.1PF00069
Pkinase 35-181 aa
PF07714
PK_Tyr_Ser-Thr 37-180 aa
PF01163
RIO1 76-176 aa
PF03109
ABC1 104-180 aa
PF06293
Kdo 122-172 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803174.1 |
Pfam | PF00069 |
Pkinase | Domain | 35 | 181 | 2.8e-46 | 158.8 | Protein kinase domain |
XP_057803174.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 37 | 180 | 7.3e-27 | 95.0 | Protein tyrosine and serine/threonine kinase |
XP_057803174.1 |
Pfam | PF01163 |
RIO1 | Domain | 76 | 176 | 2.9e-06 | 27.7 | RIO domain |
XP_057803174.1 |
Pfam | PF03109 |
ABC1 | Domain | 104 | 180 | 1.2e-08 | 35.2 | ABC1 atypical kinase-like domain |
XP_057803174.1 |
Pfam | PF06293 |
Kdo | Family | 122 | 172 | 0.00012 | 22.3 | Lipopolysaccharide kinase (Kdo/WaaP) family |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。