Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001438`

染色体: Chr03 坐标: 17070792-17073998 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001438`
名称	SmilChr03G001438
描述	uncharacterized SmilChr03G001438
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	17070792 - 17073998 / `+`

ID 对照

NCBI Gene ID	`LOC131017908`
GeneID	`131017908`
locus_tag	`-`
NCBI Name	`LOC131017908`
原始查询	`SmilChr03G001438`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:842746]; symbol=AT1G64385; hit=AT1G64385; species=arabidopsis; confidence=medium
产物	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:842746]; symbol=AT1G64385; hit=AT1G64385; species=arabidopsis; confidence=medium
Arabidopsis	`AT1G64385` (AT1G64385) uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:842746] identity=42; qcov=0.776; evalue=4.32e-44; confidence=medium
Rice	`-` -
GO	-
KEGG	-
Pfam	PF24053 (DUF7356)
InterPro	-
eggNOG	-
NR	GeneID:131017908

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	0.80000	`XP_057802631.1`
2	Endoplasmic reticulum	内质网	0.60000	`XP_057802631.1`
3	Endoplasmic reticulum membrane	内质网膜	0.40000	`XP_057802631.1`
4	Nucleus	细胞核	0.00000	`XP_057802631.1`
5	Chromosome	染色体	0.00000	`XP_057802631.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:17071337`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B40
`Chr3:17071411`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A19,B54,B63,B86
`Chr3:17071419`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr3:17071501`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B118
`Chr3:17071581`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A19
`Chr3:17072235`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B24
`Chr3:17073291`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B31,B59
`Chr3:17073532`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B3,B41,B44,D1
`Chr3:17073579`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B125,C4,C73,D5
`Chr3:17073592`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D3
`Chr3:17073651`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B71,C59

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802631.1

333 aa

166

333

DUF7356

PF24053 DUF7356 125-223 aa

XP_057802632.1

313 aa

156

313

DUF7356

PF24053 DUF7356 105-203 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802631.1`	Pfam	`PF24053`	DUF7356	Domain	125	223	2.9e-32	111.4	Domain of unknown function (DUF7356)
`XP_057802632.1`	Pfam	`PF24053`	DUF7356	Domain	105	203	2.6e-32	111.6	Domain of unknown function (DUF7356)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057946648.1
TTCAAGTCTTACCTTTTTCTTTTGACTCCTGCTCTGTATACAAATACAACCGTATACTTGTGTATACACATGCGAAATCTCACGAACCCTAGATTTTCAATTCTATATTTGTTTCTTTCCCCTTTCCGTTCACGTCGAGATTCCAATGTCTGAGCCTGTGTTATTCAGCTGAGGACAACCTATTTATAACGAAATTAGATGCTTAGCGATTGCGCTATCTTAAGTCAGATTGTTGAAAAATCATTAATCGGTTGGGGGAT...

XM_057946649.1
TCAAGTCTTACCTTTTTCTTTTGACTCCTGCTCTGTATACAAATACAACCGTATACTTGTGTATACACATGCGAAATCTCACGAACCCTAGATTTTCAATTCTATATTTGTTTCTTTCCCCTTTCCGTTCACGTCGAGATTCCAATGTCTGAGCCTGTGTTATTCAGCTGAGGACAACCTATTTATAACGAAATTAGATGCTTAGCGATTGCGCTATCTTAAGATTGTTGAAAAATCATTAATCGGTTGGGGGATGATGA...

CDS

2 records

下载 CDS FASTA

LOC131017908
ATGCTTAGCGATTGCGCTATCTTAAGTCAGATTGTTGAAAAATCATTAATCGGTTGGGGGATGATGATAAATTATACACTTCTGGTGATTTTGCTTGTACCTGCAGTAATTTCTTCTCGTGTAGCTGCAGATTCGGAGGGGGAAGTTGCAGGTTCAAAAAGTCAAGTGTTAGTTGATGGTAGTGATGGTAGGGTGAAGGAGAAAGCTGCTCTTACCAAGAATGTTGTTAAGTTGGATAATAATGATCCGAAGGAGCAGAT...

LOC131017908
ATGATGATAAATTATACACTTCTGGTGATTTTGCTTGTACCTGCAGTAATTTCTTCTCGTGTAGCTGCAGATTCGGAGGGGGAAGTTGCAGGTTCAAAAAGTCAAGTGTTAGTTGATGGTAGTGATGGTAGGGTGAAGGAGAAAGCTGCTCTTACCAAGAATGTTGTTAAGTTGGATAATAATGATCCGAAGGAGCAGATTGATCCTAAAGAAAAAGAGGAGCTAAAAAAGGGGGATGGTGGAGATCACAGGGATGAGGG...

Protein

2 records

下载 Protein FASTA

XP_057802631.1
MLSDCAILSQIVEKSLIGWGMMINYTLLVILLVPAVISSRVAADSEGEVAGSKSQVLVDGSDGRVKEKAALTKNVVKLDNNDPKEQIDPKEKEELKKGDGGDHRDEGSSSESKKESKEGRLLPVREKCDTSSNHCTDDDKTLVACLRVPGNESPSLSLLIQNKGKGPQSITISAPDSVQLERKQIELQENKDTEMKVSLRDVGNGHSIVLTAGHGNCILDLKDEFTSRKMDDHTPSSSNLIISRPTLFRGVVFLGGLVIV...

XP_057802632.1
MMINYTLLVILLVPAVISSRVAADSEGEVAGSKSQVLVDGSDGRVKEKAALTKNVVKLDNNDPKEQIDPKEKEELKKGDGGDHRDEGSSSESKKESKEGRLLPVREKCDTSSNHCTDDDKTLVACLRVPGNESPSLSLLIQNKGKGPQSITISAPDSVQLERKQIELQENKDTEMKVSLRDVGNGHSIVLTAGHGNCILDLKDEFTSRKMDDHTPSSSNLIISRPTLFRGVVFLGGLVIVGVSIFMCSKSGRNYFARKDR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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