Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001449`

染色体: Chr03 坐标: 17279033-17287354 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001449`
名称	SmilChr03G001449
描述	long chain acyl-CoA synthetase 4-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	17279033 - 17287354 / `-`

ID 对照

NCBI Gene ID	`LOC131017918`
GeneID	`131017918`
locus_tag	`-`
NCBI Name	`LOC131017918`
原始查询	`SmilChr03G001449`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	long chain acyl-CoA synthetase 4-like
产物	long chain acyl-CoA synthetase 4-like
Arabidopsis	`AT4G23850` (LACS4) AMP-dependent synthetase and ligase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828484] identity=73.6; qcov=0.995; evalue=0; confidence=high
Rice	`Os01g0681200` - identity=71; qcov=1; evalue=0; confidence=high
GO	GO:0004467 (long-chain fatty acid-CoA ligase activity); GO:0005783 (endoplasmic reticulum); GO:0006631 (fatty acid metabolic process); GO:0016020 (membrane)
KEGG	smil00061 (Fatty acid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00071 (Fatty acid degradation - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01212 (Fatty acid metabolism - Salvia miltiorrhiza (redroot sage)); smil04146 (Peroxisome - Salvia miltiorrhiza (redroot sage))
Pfam	PF00501 (AMP-binding)
InterPro	-
eggNOG	-
NR	GeneID:131017918

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057802642.1`
2	Cytoplasm	细胞质	0.40000	`XP_057802643.1`
3	Cytosol	细胞质基质	0.20000	`XP_057802642.1`
4	Lipid droplet	脂滴	0.20000	`XP_057802642.1`
5	Nucleus	细胞核	0.00000	`XP_057802642.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:17280115`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A8
`Chr3:17280664`	`CA`	`C`	1bp_deletion	frameshift_variant	3	B4,B42,C71
`Chr3:17280664`	`CA`	`C`	1bp_deletion	CDS_variant	3	B4,B42,C71
`Chr3:17280676`	`G`	`GAA`	2bp_insertion	frameshift_variant	1	C64
`Chr3:17280676`	`G`	`GAA`	2bp_insertion	CDS_variant	1	C64
`Chr3:17280686`	`T`	`TG`	1bp_insertion	frameshift_variant	4	A6,B52,B9,C7
`Chr3:17280686`	`T`	`TG`	1bp_insertion	CDS_variant	4	A6,B52,B9,C7
`Chr3:17280691`	`GGA`	`G`	2bp_deletion	frameshift_variant	6	A6,B52,B9,C43,C68,C7
`Chr3:17280703`	`CAA`	`C`	2bp_deletion	frameshift_variant	24	A3,A4,A6,B1,B122,B15,B44,B49,B52,B65,B7,B70,B73,B78,B8,B9,B94,C15,C21,C43,C60,C68,C7,C86
`Chr3:17280732`	`TG`	`T`	1bp_deletion	frameshift_variant	5	B122,B52,B70,B78,C21
`Chr3:17280732`	`TG`	`T`	1bp_deletion	CDS_variant	5	B122,B52,B70,B78,C21
`Chr3:17280741`	`T`	`TAG`	2bp_insertion	frameshift_variant	7	A3,B1,B65,B8,B94,C15,C60

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802642.1

688 aa

344

688

AMP-binding

PF00501 AMP-binding 55-482 aa

XP_057802643.1

658 aa

329

658

AMP-binding

PF00501 AMP-binding 55-482 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802642.1`	Pfam	`PF00501`	AMP-binding	Family	55	482	7.7e-82	275.8	AMP-binding enzyme
`XP_057802643.1`	Pfam	`PF00501`	AMP-binding	Family	55	482	6.8e-82	276.0	AMP-binding enzyme

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057946660.1
TTTTGAACTCTGCGATTCTGTGTCTTAAAATACAGATCTAGTCTTCTCCTAGCTTTGGCCATTTTGTCTTGAAGTGAACTGCATTTACTGGTTAAATACTATACGACGTTGTAAGGCCCCAGTCTTGCTTTAGCCACCACACTACGAAACCAGACCTATTCAATTCTCGTGTATAACTGCCCTCCTCGCTCGCATTTATATTCACGCATTTCATCTACGCACAGAGAGAGAGAGAGAGAGAGATTTGAAAATGGCAAAGG...

XM_057946659.1
TTTGAACTCTGCGATTCTGTGTCTTAAAATACAGATCTAGTCTTCTCCTAGCTTTGGCCATTTTGTCTTGAAGTGAACTGCATTTACTGGTTAAATACTATACGACGTTGTAAGGCCCCAGTCTTGCTTTAGCCACCACACTACGAAACCAGACCTATTCAATTCTCGTGTATAACTGCCCTCCTCGCTCGCATTTATATTCACGCATTTCATCTACGCACAGAGAGAGAGAGAGAGAGAGATTTGAAAATGGCAAAGGA...

CDS

2 records

下载 CDS FASTA

LOC131017918
ATGGCAAAGGAGAAGTATATCGTGGAAGTAGAGCCAGGGAAGCCTGCCAAGGACGGCAAGCCGTCGATCGGACCGGTTTATCGGAGCATTTTTGCCAAGGATGGTTTTCCGGCTCCGATTCCAGGACTTGACAGCTGTTGGGATATTTTCCGTTTGTCAGTAGACAAATATCCCGATAACAGGATGCTTGGTCGCCGTGAAATTGTCGATGGGAAGCCAGGTAAATACTTATGGATGACTTACAGAGAGGTGTACAACGT...

Protein

2 records

下载 Protein FASTA

XP_057802642.1
MAKEKYIVEVEPGKPAKDGKPSIGPVYRSIFAKDGFPAPIPGLDSCWDIFRLSVDKYPDNRMLGRREIVDGKPGKYLWMTYREVYNVVVKVGNSIRSCGIEKGGRCGIYGANSPEWIMSMEACNAHGLYCIPLYDTLGAGAIEFIICHAEVALAFVEEKKISELLKTFPGAASYLKTIVSFGKASSQQKEEAEKYGVTMYSWDDFLSLGSNKPFELPVKKKSDICTIMYTSGTTGDPKGVMISNNSIVTLIAGVKRLLES...

XP_057802643.1
MAKEKYIVEVEPGKPAKDGKPSIGPVYRSIFAKDGFPAPIPGLDSCWDIFRLSVDKYPDNRMLGRREIVDGKPGKYLWMTYREVYNVVVKVGNSIRSCGIEKGGRCGIYGANSPEWIMSMEACNAHGLYCIPLYDTLGAGAIEFIICHAEVALAFVEEKKISELLKTFPGAASYLKTIVSFGKASSQQKEEAEKYGVTMYSWDDFLSLGSNKPFELPVKKKSDICTIMYTSGTTGDPKGVMISNNSIVTLIAGVKRLLES...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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