Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001461`

染色体: Chr03 坐标: 17462036-17467359 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001461`
名称	SmilChr03G001461
描述	receptor kinase-like protein Xa21
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	17462036 - 17467359 / `+`

ID 对照

NCBI Gene ID	`LOC131017929`
GeneID	`131017929`
locus_tag	`-`
NCBI Name	`LOC131017929`
原始查询	`SmilChr03G001461`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	receptor kinase-like protein Xa21
产物	receptor kinase-like protein Xa21
Arabidopsis	`AT3G47570` (AT3G47570) Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:823911] identity=34; qcov=1; evalue=1.91e-112; confidence=low
Rice	`Os02g0615500` (P0407A09.27-1) - identity=38.4; qcov=0.98; evalue=9.84e-126; confidence=medium
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:131017929

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057802650.1`
2	Nucleus	细胞核	0.00000	`XP_057802650.1`
3	Chromosome	染色体	0.00000	`XP_057802650.1`
4	Centromere	着丝粒	0.00000	`XP_057802650.1`
5	Chromatin	染色质	0.00000	`XP_057802650.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:17463741`	`GT`	`G`	1bp_deletion	frameshift_variant	16	A3,B102,B103,B117,B12,B128,B13,B35,B55,B81,B97,C31,C49,C55,C57,C76
`Chr3:17463801`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D1
`Chr3:17463818`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A20,B122,D3
`Chr3:17464082`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B59,B85
`Chr3:17464110`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B107
`Chr3:17464114`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B107
`Chr3:17464191`	`C`	`CA`	1bp_insertion	frameshift_variant	31	A13,A20,A9,B1,B10,B101,B110,B112,B115,B121,B122,B126,B131,B133,B34,B41,B44,B59,B61,B68,B74,B83,B86,B93,C32,C4,C49,C59,C68,C69,D11
`Chr3:17464196`	`AAG`	`A`	2bp_deletion	frameshift_variant	31	A13,A20,A9,B1,B10,B101,B110,B112,B115,B121,B122,B126,B131,B133,B34,B41,B44,B59,B61,B68,B74,B83,B86,B93,C32,C4,C49,C59,C68,C69,D11
`Chr3:17464332`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A20,B101,C36,C69
`Chr3:17464440`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C12,C60
`Chr3:17464504`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr3:17464835`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B47,B78,C53,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802650.1

893 aa

446

893

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF00560 LRR_1 78-100 aa PF13855 LRR_8 139-194 aa PF00560 LRR_1 214-235 aa PF00560 LRR_1 367-389 aa PF00560 LRR_1 391-411 aa PF00560 LRR_1 416-436 aa PF00069 Pkinase 551-817 aa PF07714 PK_Tyr_Ser-Thr 552-819 aa

XP_057802651.1

893 aa

446

893

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

XP_057802652.1

867 aa

434

867

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF00560 LRR_1 52-74 aa PF13855 LRR_8 113-168 aa PF00560 LRR_1 188-209 aa PF00560 LRR_1 341-363 aa PF00560 LRR_1 365-385 aa PF00560 LRR_1 390-410 aa PF00069 Pkinase 525-791 aa PF07714 PK_Tyr_Ser-Thr 526-793 aa

XP_057802653.1

821 aa

410

821

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF00560 LRR_1 6-28 aa PF13855 LRR_8 67-122 aa PF00560 LRR_1 142-163 aa PF00560 LRR_1 295-317 aa PF00560 LRR_1 319-339 aa PF00560 LRR_1 344-364 aa PF00069 Pkinase 479-745 aa PF07714 PK_Tyr_Ser-Thr 480-747 aa

XP_057802654.1

821 aa

410

821

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

XP_057802656.1

779 aa

390

779

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF13855 LRR_8 25-80 aa PF00560 LRR_1 100-121 aa PF00560 LRR_1 253-275 aa PF00560 LRR_1 277-297 aa PF00560 LRR_1 302-322 aa PF00069 Pkinase 437-703 aa PF07714 PK_Tyr_Ser-Thr 438-705 aa

XP_057802657.1

718 aa

359

718

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF00560 LRR_1 39-60 aa PF00560 LRR_1 192-214 aa PF00560 LRR_1 216-236 aa PF00560 LRR_1 241-261 aa PF00069 Pkinase 376-642 aa PF07714 PK_Tyr_Ser-Thr 377-644 aa

XP_057802658.1

707 aa

354

707

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802650.1`	Pfam	`PF00560`	LRR_1	Repeat	78	100	3.2e-28	92.4	Leucine Rich Repeat
`XP_057802650.1`	Pfam	`PF13855`	LRR_8	Repeat	139	194	6.6e-31	106.6	Leucine rich repeat
`XP_057802650.1`	Pfam	`PF00560`	LRR_1	Repeat	214	235	3.2e-28	92.4	Leucine Rich Repeat
`XP_057802650.1`	Pfam	`PF00560`	LRR_1	Repeat	367	389	3.2e-28	92.4	Leucine Rich Repeat
`XP_057802650.1`	Pfam	`PF00560`	LRR_1	Repeat	391	411	3.2e-28	92.4	Leucine Rich Repeat
`XP_057802650.1`	Pfam	`PF00560`	LRR_1	Repeat	416	436	3.2e-28	92.4	Leucine Rich Repeat
`XP_057802650.1`	Pfam	`PF00069`	Pkinase	Domain	551	817	2.6e-39	136.0	Protein kinase domain
`XP_057802650.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	552	819	8.3e-38	130.9	Protein tyrosine and serine/threonine kinase
`XP_057802651.1`	Pfam	`PF00560`	LRR_1	Repeat	78	100	3.2e-28	92.4	Leucine Rich Repeat
`XP_057802651.1`	Pfam	`PF13855`	LRR_8	Repeat	139	194	6.6e-31	106.6	Leucine rich repeat
`XP_057802651.1`	Pfam	`PF00560`	LRR_1	Repeat	214	235	3.2e-28	92.4	Leucine Rich Repeat
`XP_057802651.1`	Pfam	`PF00560`	LRR_1	Repeat	367	389	3.2e-28	92.4	Leucine Rich Repeat
`XP_057802651.1`	Pfam	`PF00560`	LRR_1	Repeat	391	411	3.2e-28	92.4	Leucine Rich Repeat
`XP_057802651.1`	Pfam	`PF00560`	LRR_1	Repeat	416	436	3.2e-28	92.4	Leucine Rich Repeat
`XP_057802651.1`	Pfam	`PF00069`	Pkinase	Domain	551	817	2.6e-39	136.0	Protein kinase domain
`XP_057802651.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	552	819	8.3e-38	130.9	Protein tyrosine and serine/threonine kinase
`XP_057802652.1`	Pfam	`PF00560`	LRR_1	Repeat	52	74	1.3e-26	87.6	Leucine Rich Repeat
`XP_057802652.1`	Pfam	`PF13855`	LRR_8	Repeat	113	168	1.2e-30	105.8	Leucine rich repeat
`XP_057802652.1`	Pfam	`PF00560`	LRR_1	Repeat	188	209	1.3e-26	87.6	Leucine Rich Repeat
`XP_057802652.1`	Pfam	`PF00560`	LRR_1	Repeat	341	363	1.3e-26	87.6	Leucine Rich Repeat
`XP_057802652.1`	Pfam	`PF00560`	LRR_1	Repeat	365	385	1.3e-26	87.6	Leucine Rich Repeat
`XP_057802652.1`	Pfam	`PF00560`	LRR_1	Repeat	390	410	1.3e-26	87.6	Leucine Rich Repeat
`XP_057802652.1`	Pfam	`PF00069`	Pkinase	Domain	525	791	2.4e-39	136.0	Protein kinase domain
`XP_057802652.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	526	793	7.8e-38	131.0	Protein tyrosine and serine/threonine kinase
`XP_057802653.1`	Pfam	`PF00560`	LRR_1	Repeat	6	28	4.6e-27	88.9	Leucine Rich Repeat
`XP_057802653.1`	Pfam	`PF13855`	LRR_8	Repeat	67	122	1.9e-30	105.1	Leucine rich repeat
`XP_057802653.1`	Pfam	`PF00560`	LRR_1	Repeat	142	163	4.6e-27	88.9	Leucine Rich Repeat
`XP_057802653.1`	Pfam	`PF00560`	LRR_1	Repeat	295	317	4.6e-27	88.9	Leucine Rich Repeat
`XP_057802653.1`	Pfam	`PF00560`	LRR_1	Repeat	319	339	4.6e-27	88.9	Leucine Rich Repeat
`XP_057802653.1`	Pfam	`PF00560`	LRR_1	Repeat	344	364	4.6e-27	88.9	Leucine Rich Repeat
`XP_057802653.1`	Pfam	`PF00069`	Pkinase	Domain	479	745	2.2e-39	136.2	Protein kinase domain
`XP_057802653.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	480	747	6.9e-38	131.1	Protein tyrosine and serine/threonine kinase
`XP_057802654.1`	Pfam	`PF00560`	LRR_1	Repeat	6	28	4.6e-27	88.9	Leucine Rich Repeat
`XP_057802654.1`	Pfam	`PF13855`	LRR_8	Repeat	67	122	1.9e-30	105.1	Leucine rich repeat
`XP_057802654.1`	Pfam	`PF00560`	LRR_1	Repeat	142	163	4.6e-27	88.9	Leucine Rich Repeat
`XP_057802654.1`	Pfam	`PF00560`	LRR_1	Repeat	295	317	4.6e-27	88.9	Leucine Rich Repeat
`XP_057802654.1`	Pfam	`PF00560`	LRR_1	Repeat	319	339	4.6e-27	88.9	Leucine Rich Repeat
`XP_057802654.1`	Pfam	`PF00560`	LRR_1	Repeat	344	364	4.6e-27	88.9	Leucine Rich Repeat
`XP_057802654.1`	Pfam	`PF00069`	Pkinase	Domain	479	745	2.2e-39	136.2	Protein kinase domain
`XP_057802654.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	480	747	6.9e-38	131.1	Protein tyrosine and serine/threonine kinase
`XP_057802656.1`	Pfam	`PF13855`	LRR_8	Repeat	25	80	4.9e-26	91.0	Leucine rich repeat
`XP_057802656.1`	Pfam	`PF00560`	LRR_1	Repeat	100	121	4.6e-22	74.1	Leucine Rich Repeat
`XP_057802656.1`	Pfam	`PF00560`	LRR_1	Repeat	253	275	4.6e-22	74.1	Leucine Rich Repeat
`XP_057802656.1`	Pfam	`PF00560`	LRR_1	Repeat	277	297	4.6e-22	74.1	Leucine Rich Repeat
`XP_057802656.1`	Pfam	`PF00560`	LRR_1	Repeat	302	322	4.6e-22	74.1	Leucine Rich Repeat
`XP_057802656.1`	Pfam	`PF00069`	Pkinase	Domain	437	703	2e-39	136.3	Protein kinase domain
`XP_057802656.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	438	705	6.1e-38	131.3	Protein tyrosine and serine/threonine kinase
`XP_057802657.1`	Pfam	`PF00560`	LRR_1	Repeat	39	60	2.4e-19	66.0	Leucine Rich Repeat
`XP_057802657.1`	Pfam	`PF00560`	LRR_1	Repeat	192	214	2.4e-19	66.0	Leucine Rich Repeat
`XP_057802657.1`	Pfam	`PF00560`	LRR_1	Repeat	216	236	2.4e-19	66.0	Leucine Rich Repeat
`XP_057802657.1`	Pfam	`PF00560`	LRR_1	Repeat	241	261	2.4e-19	66.0	Leucine Rich Repeat
`XP_057802657.1`	Pfam	`PF00069`	Pkinase	Domain	376	642	1.7e-39	136.6	Protein kinase domain
`XP_057802657.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	377	644	5e-38	131.6	Protein tyrosine and serine/threonine kinase
`XP_057802658.1`	Pfam	`PF00560`	LRR_1	Repeat	78	100	8.6e-30	97.1	Leucine Rich Repeat
`XP_057802658.1`	Pfam	`PF13855`	LRR_8	Repeat	139	194	8.2e-32	109.5	Leucine rich repeat
`XP_057802658.1`	Pfam	`PF00560`	LRR_1	Repeat	214	235	8.6e-30	97.1	Leucine Rich Repeat
`XP_057802658.1`	Pfam	`PF00560`	LRR_1	Repeat	367	389	8.6e-30	97.1	Leucine Rich Repeat
`XP_057802658.1`	Pfam	`PF00560`	LRR_1	Repeat	391	411	8.6e-30	97.1	Leucine Rich Repeat
`XP_057802658.1`	Pfam	`PF00560`	LRR_1	Repeat	416	436	8.6e-30	97.1	Leucine Rich Repeat
`XP_057802658.1`	Pfam	`PF00069`	Pkinase	Domain	551	701	5.3e-27	95.6	Protein kinase domain
`XP_057802658.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	552	704	6e-26	92.0	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

8 records

下载 cDNA FASTA

XM_057946668.1
AAGAGACTTGAGTAATAGTGTGATCAAATCAAGGAACAAAACTAAGGCTTTGTAAAAATTTATGCAATCACAGCTTTAGTAGATAAGGTGCTCGACGATTGGTCTCACAGAAATCCTCTCCATTTTCCAAGAACGGCGAACTTCTGCAGCTGAGCTGATAAAGACGCCACTAGGAACTGGTCCAAGGAAACCTCGTTATGCACTTGGACCGGCGTCATTTGTGGCAAGAAGCATCCACGGAGAGTGACAGCTATCAATCT...

XM_057946671.1
AGAGACTTGAGTAATAGTGTGATCAAATCAAGGAACAAAACTAAGGCTTTGTAAAAATTTATGCAATCACAGCTTTAGTAGATAAGGTGCTCGACGATTGGTCTCACAGAAATCCTCTCCATTTTCCAAGAACGGCGAACTTCTGCAGCTGAGCTGATAAAGACGCCACTAGGAACTGGTCCAAGGAAACCTCGTTATGCACTTGGACCGGCGTCATTTGTGGCAAGAAGCATCCACGGAGAGTGACAGCTATCAATCTT...

CDS

8 records

下载 CDS FASTA

LOC131017929
ATGAGACCTATGGCCTCGGGCATTAACTACTCCACAACTAGGCCAACACACGCACAAAACATCATCCCCTTTCACTCTGATGCGTTGTTGTTCTCTCAAAAAGACAGATTCTTGTCGGGATTTACAGGTACGGTTCCAACATCAATTGGCAATTTGTCGAATTTGGAGGTATTCGATTTCAGCAGGAACAGTTTTTATGGGACAGTTGTGTCAGAAATGGGACAACTATCCAGCTTGAGAATACTGAATCTTCAATCAAA...

Protein

8 records

下载 Protein FASTA

XP_057802650.1
MRPMASGINYSTTRPTHAQNIIPFHSDALLFSQKDRFLSGFTGTVPTSIGNLSNLEVFDFSRNSFYGTVVSEMGQLSSLRILNLQSNNLSGEVPQAIFNLSMLQFLSLRENNLSGSLPFSIDTGLPNIEQIFLGNIQQRFDLRANRFHGEIPSSISNLSKLIALDLSDNSFNHVPMNLGSLHQLQMLNLEANQLTNNLSNPEQDFLSSLAACKNLRFIQISFNPITGVLPKSLGSSNLSVSLETFKAFSCKILSPIPDEI...

XP_057802651.1
MRPMASGINYSTTRPTHAQNIIPFHSDALLFSQKDRFLSGFTGTVPTSIGNLSNLEVFDFSRNSFYGTVVSEMGQLSSLRILNLQSNNLSGEVPQAIFNLSMLQFLSLRENNLSGSLPFSIDTGLPNIEQIFLGNIQQRFDLRANRFHGEIPSSISNLSKLIALDLSDNSFNHVPMNLGSLHQLQMLNLEANQLTNNLSNPEQDFLSSLAACKNLRFIQISFNPITGVLPKSLGSSNLSVSLETFKAFSCKILSPIPDEI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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