Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001463`

染色体: Chr03 坐标: 17489308-17493704 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001463`
名称	SmilChr03G001463
描述	putative late blight resistance protein homolog R1B-16
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	17489308 - 17493704 / `+`

ID 对照

NCBI Gene ID	`LOC131017930`
GeneID	`131017930`
locus_tag	`-`
NCBI Name	`LOC131017930`
原始查询	`SmilChr03G001463`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative late blight resistance protein homolog R1B-16
产物	putative late blight resistance protein homolog R1B-16
Arabidopsis	`AT5G43470` (RPP8) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:834367] identity=27.2; qcov=1.09; evalue=4.87e-71; confidence=low
Rice	`Os08g0424700` (P0456B03.103) - identity=25.7; qcov=1.02; evalue=5.44e-62; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131017930

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057802659.1`
2	Nucleus	细胞核	0.00000	`XP_057802659.1`
3	Chromosome	染色体	0.00000	`XP_057802659.1`
4	Centromere	着丝粒	0.00000	`XP_057802659.1`
5	Chromatin	染色质	0.00000	`XP_057802659.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:17489493`	`CT`	`C`	1bp_deletion	frameshift_variant	2	B98,C14
`Chr3:17489493`	`CT`	`C`	1bp_deletion	CDS_variant	2	B98,C14
`Chr3:17489557`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B113
`Chr3:17489594`	`A`	`AT`	1bp_insertion	frameshift_variant	1	C53
`Chr3:17489594`	`A`	`AT`	1bp_insertion	CDS_variant	1	C53
`Chr3:17489607`	`C`	`T`	EMS_canonical_SNV	stop_gained	39	A19,A21,A23,A24,B120,B123,B131,B134,B137,B16,B20,B29,B30,B4,B56,B58,B60,B7,B70,B75,B76,B78,B81,B96,C1,C15,C40,C50,C52,C57,C58,C65,C74,C77,C82,C85,D10,D6,D9
`Chr3:17489608`	`AGG`	`A`	2bp_deletion	frameshift_variant	1	B59
`Chr3:17489608`	`AGG`	`A`	2bp_deletion	CDS_variant	1	B59
`Chr3:17489714`	`AGC`	`A`	2bp_deletion	frameshift_variant	28	A22,B1,B126,B131,B133,B135,B21,B4,B40,B6,B63,B74,B75,B8,B81,B83,B95,B98,C21,C26,C31,C34,C49,C58,C63,C67,C71,C82
`Chr3:17489719`	`C`	`CCA`	2bp_insertion	frameshift_variant	28	A22,B1,B126,B131,B133,B135,B21,B4,B40,B6,B63,B74,B75,B8,B81,B83,B95,B98,C21,C26,C31,C34,C49,C58,C63,C67,C71,C82
`Chr3:17489835`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B48,C18,C66
`Chr3:17489876`	`AG`	`A`	1bp_deletion	CDS_variant	1	B50

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802659.1

825 aa

412

825

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 178-296 aa PF23559 WHD_DRP 377-449 aa PF23598 LRR_14 505-696 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802659.1`	Pfam	`PF00931`	NB-ARC	Domain	178	296	3.4e-26	92.6	NB-ARC domain
`XP_057802659.1`	Pfam	`PF23559`	WHD_DRP	Domain	377	449	2e-20	73.3	Disease resistance protein Winged helix domain
`XP_057802659.1`	Pfam	`PF23598`	LRR_14	Repeat	505	696	1.7e-24	87.0	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XR_009099933.1
GCTTATGCTTGGTTCCATATGCTTGGTTTTATGTATTTCAATAATCAATAGTAATTTATATCTATGTCTTCTAAACTGGCCCTGCTCTCTTTCAGCTATTCTTCCAGCTTAGTATTATCTTTATCTGCAAAAATCTAGTAGCAAAAACTTCTTAACTGTGATCACCAAAGATGGCTTATGCTGCTCTTCTTTCCCTTGCCCGAACCACTGCAAAAATAATCTTGGATCAAGATAGATATTCAATTTCTTGTAATAAAAAA...

XR_009099934.1
ATATGCTTGGTTTTATGTATTTCAATAATCAATAGTAATTTATATCTATGTCTTCTAAACTGGCCCTGCTCTCTTTCAGCTATTCTTCCAGCTTAGTATTATCTTTATCTGCAAAAATCTAGTAGCAAAAACTTCTTAACTGTGATCACCAAAGATGGCTTATGCTGCTCTTCTTTCCCTTGCCCGAACCACTGCAAAAATAATCTTGGATCAAGATAGATATTCAATTTCTTGTAATAAAAAACAACAAATTCGATCTA...

CDS

1 records

下载 CDS FASTA

LOC131017930
ATGGCTTATGCTGCTCTTCTTTCCCTTGCCCGAACCACTGCAAAAATAATCTTGGATCAAGATAGATATTCAATTTCTTGTAATAAAAAACAACAAATTCGATCTATCTATGAACCATTTATTTTCTTGCAGGAGTTTCTTGATGATTTTCCCAAGAAAGCCAACATCTTGGATGGGCGAATAAGAGATTTAGCATATGAAGCAGAACATGTTATTGAGTCTTTCATATTGGAGGAAGCTCCATCACATTGGTGGAATGT...

Protein

1 records

下载 Protein FASTA

XP_057802659.1
MAYAALLSLARTTAKIILDQDRYSISCNKKQQIRSIYEPFIFLQEFLDDFPKKANILDGRIRDLAYEAEHVIESFILEEAPSHWWNVLAAKSKLKWQIRKIREETDSITREVMIIKNNSADAVQLGASSSSAAGSPSRSAPIIKIGYMVGLPEDLLAIKYRLCGESPNLQVIPIVGMGVSQDYNADVVLSALLASMEEFNKERSERSSELVGEKVFKILKRRRYLIVMDDVWSTKAWDDVRIMLPDDGNRSRVMLTTRET...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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