Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001467`

染色体: Chr03 坐标: 17536642-17542307 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001467`
名称	SmilChr03G001467
描述	receptor kinase-like protein Xa21
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	17536642 - 17542307 / `+`

ID 对照

NCBI Gene ID	`LOC131017933`
GeneID	`131017933`
locus_tag	`-`
NCBI Name	`LOC131017933`
原始查询	`SmilChr03G001467`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	receptor kinase-like protein Xa21
产物	receptor kinase-like protein Xa21
Arabidopsis	`AT3G47570` (AT3G47570) Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:823911] identity=35.4; qcov=1.03; evalue=1.42e-151; confidence=medium
Rice	`Os11g0490200` - identity=38; qcov=1.05; evalue=7.96e-173; confidence=medium
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13855 (LRR_8); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131017933

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057802662.1`
2	Nucleus	细胞核	0.00000	`XP_057802662.1`
3	Chromosome	染色体	0.00000	`XP_057802662.1`
4	Centromere	着丝粒	0.00000	`XP_057802662.1`
5	Chromatin	染色质	0.00000	`XP_057802662.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:17536880`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B104
`Chr3:17536880`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:17536945`	`G`	`GT`	1bp_insertion	frameshift_variant	1	B105
`Chr3:17536945`	`G`	`GT`	1bp_insertion	CDS_variant	1	B105
`Chr3:17538199`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B85
`Chr3:17538299`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C67,C83
`Chr3:17538391`	`C`	`CA`	1bp_insertion	frameshift_variant	19	A20,A9,B1,B122,B126,B133,B28,B34,B36,B48,B59,B74,B85,B95,C11,C36,C4,C65,D3
`Chr3:17538396`	`AAG`	`A`	2bp_deletion	frameshift_variant	19	A20,A9,B1,B122,B126,B133,B28,B34,B36,B48,B59,B74,B85,B95,C11,C36,C4,C65,D3
`Chr3:17538640`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B128,C70
`Chr3:17538944`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B7,C44
`Chr3:17538975`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A14,A24,B46,B50,D3
`Chr3:17539017`	`T`	`TTG`	2bp_insertion	frameshift_variant	1	B1

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802662.1

1032 aa

516

1032

LRRNT_2

LRR_14

LRR_1

LRR_8

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 32-66 aa PF23598 LRR_14 84-200 aa PF00560 LRR_1 97-117 aa PF13855 LRR_8 97-156 aa PF00560 LRR_1 121-142 aa PF00560 LRR_1 145-167 aa PF13855 LRR_8 145-203 aa PF00560 LRR_1 169-191 aa PF00560 LRR_1 217-239 aa PF00560 LRR_1 353-374 aa PF00560 LRR_1 506-528 aa PF00560 LRR_1 530-550 aa PF00560 LRR_1 555-575 aa PF00069 Pkinase 687-957 aa PF07714 PK_Tyr_Ser-Thr 690-956 aa

XP_057802664.1

864 aa

432

864

LRRNT_2

LRR_14

LRR_1

LRR_8

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802662.1`	Pfam	`PF08263`	LRRNT_2	Family	32	66	1e-06	29.6	Leucine rich repeat N-terminal domain
`XP_057802662.1`	Pfam	`PF23598`	LRR_14	Repeat	84	200	1e-36	127.2	Leucine-rich repeat region
`XP_057802662.1`	Pfam	`PF00560`	LRR_1	Repeat	97	117	3.1e-42	134.1	Leucine Rich Repeat
`XP_057802662.1`	Pfam	`PF13855`	LRR_8	Repeat	97	156	5.4e-42	142.1	Leucine rich repeat
`XP_057802662.1`	Pfam	`PF00560`	LRR_1	Repeat	121	142	3.1e-42	134.1	Leucine Rich Repeat
`XP_057802662.1`	Pfam	`PF00560`	LRR_1	Repeat	145	167	3.1e-42	134.1	Leucine Rich Repeat
`XP_057802662.1`	Pfam	`PF13855`	LRR_8	Repeat	145	203	5.4e-42	142.1	Leucine rich repeat
`XP_057802662.1`	Pfam	`PF00560`	LRR_1	Repeat	169	191	3.1e-42	134.1	Leucine Rich Repeat
`XP_057802662.1`	Pfam	`PF00560`	LRR_1	Repeat	217	239	3.1e-42	134.1	Leucine Rich Repeat
`XP_057802662.1`	Pfam	`PF00560`	LRR_1	Repeat	353	374	3.1e-42	134.1	Leucine Rich Repeat
`XP_057802662.1`	Pfam	`PF00560`	LRR_1	Repeat	506	528	3.1e-42	134.1	Leucine Rich Repeat
`XP_057802662.1`	Pfam	`PF00560`	LRR_1	Repeat	530	550	3.1e-42	134.1	Leucine Rich Repeat
`XP_057802662.1`	Pfam	`PF00560`	LRR_1	Repeat	555	575	3.1e-42	134.1	Leucine Rich Repeat
`XP_057802662.1`	Pfam	`PF00069`	Pkinase	Domain	687	957	3.4e-41	142.1	Protein kinase domain
`XP_057802662.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	690	956	3.3e-38	132.2	Protein tyrosine and serine/threonine kinase
`XP_057802664.1`	Pfam	`PF08263`	LRRNT_2	Family	32	66	8.2e-07	29.9	Leucine rich repeat N-terminal domain
`XP_057802664.1`	Pfam	`PF23598`	LRR_14	Repeat	84	200	3e-37	128.9	Leucine-rich repeat region
`XP_057802664.1`	Pfam	`PF00560`	LRR_1	Repeat	97	117	3.2e-44	140.0	Leucine Rich Repeat
`XP_057802664.1`	Pfam	`PF13855`	LRR_8	Repeat	97	156	8.7e-43	144.6	Leucine rich repeat
`XP_057802664.1`	Pfam	`PF00560`	LRR_1	Repeat	121	142	3.2e-44	140.0	Leucine Rich Repeat
`XP_057802664.1`	Pfam	`PF00560`	LRR_1	Repeat	145	167	3.2e-44	140.0	Leucine Rich Repeat
`XP_057802664.1`	Pfam	`PF13855`	LRR_8	Repeat	145	203	8.7e-43	144.6	Leucine rich repeat
`XP_057802664.1`	Pfam	`PF00560`	LRR_1	Repeat	169	191	3.2e-44	140.0	Leucine Rich Repeat
`XP_057802664.1`	Pfam	`PF00560`	LRR_1	Repeat	217	239	3.2e-44	140.0	Leucine Rich Repeat
`XP_057802664.1`	Pfam	`PF00560`	LRR_1	Repeat	353	374	3.2e-44	140.0	Leucine Rich Repeat
`XP_057802664.1`	Pfam	`PF00560`	LRR_1	Repeat	506	528	3.2e-44	140.0	Leucine Rich Repeat
`XP_057802664.1`	Pfam	`PF00560`	LRR_1	Repeat	530	550	3.2e-44	140.0	Leucine Rich Repeat
`XP_057802664.1`	Pfam	`PF00560`	LRR_1	Repeat	555	575	3.2e-44	140.0	Leucine Rich Repeat
`XP_057802664.1`	Pfam	`PF00069`	Pkinase	Domain	687	855	5.9e-32	111.8	Protein kinase domain
`XP_057802664.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	690	854	4e-27	95.9	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XR_009099935.1
CCATCATCATCATCATCATTATTTATCGACTGGGGCACTCTCTCTCATGATAAGAAATGGGGAAATCAGCCAAAATAGTAATGTTGCTGGGGATATTTTCCTTGAGAATCTGCTTTGCTGCATCTGCATTTATTAACATGTCTACTGTGGATGAGTTGTCTCTCCTGTCCATGAAAGCTAACATAAATTCCGACATCCTGGCTAGGAACTGGTCCAAGGAAACCTCGTTATGCACTTGGACCGGCGTCATTTGTGGCAAG...

XR_009099936.1
CCATCATCATCATCATCATTATTTATCGACTGGGGCACTCTCTCTCATGATAAGAAATGGGGAAATCAGCCAAAATAGTAATGTTGCTGGGGATATTTTCCTTGAGAATCTGCTTTGCTGCATCTGCATTTATTAACATGTCTACTGTGGATGAGTTGTCTCTCCTGTCCATGAAAGCTAACATAAATTCCGACATCCTGGCTAGGAACTGGTCCAAGGAAACCTCGTTATGCACTTGGACCGGCGTCATTTGTGGCAAG...

CDS

2 records

下载 CDS FASTA

LOC131017933
ATGGGGAAATCAGCCAAAATAGTAATGTTGCTGGGGATATTTTCCTTGAGAATCTGCTTTGCTGCATCTGCATTTATTAACATGTCTACTGTGGATGAGTTGTCTCTCCTGTCCATGAAAGCTAACATAAATTCCGACATCCTGGCTAGGAACTGGTCCAAGGAAACCTCGTTATGCACTTGGACCGGCGTCATTTGTGGCAAGAAGCATCCACGGAGAGTGACAGCTATCAATCTTGCAAATATGGGTTTGGAGGGAAC...

Protein

2 records

下载 Protein FASTA

XP_057802662.1
MGKSAKIVMLLGIFSLRICFAASAFINMSTVDELSLLSMKANINSDILARNWSKETSLCTWTGVICGKKHPRRVTAINLANMGLEGTIAKEIGNLSSLRFVDISNNSINGQIPSEIGLLGKLQGLNLSHNYLSGDIPTSLSPCVQLKMLDLSHNNLTGTVPAGFGNWSQLQDLSLSRNYLTGTVPTTIGNLSNLEVLDFSRNSFYGTVVSAMGQLSSLRILNLQANNLSGEVPQAIFNLSMLEFLSLRENNLFGSLPFSI...

XP_057802664.1
MGKSAKIVMLLGIFSLRICFAASAFINMSTVDELSLLSMKANINSDILARNWSKETSLCTWTGVICGKKHPRRVTAINLANMGLEGTIAKEIGNLSSLRFVDISNNSINGQIPSEIGLLGKLQGLNLSHNYLSGDIPTSLSPCVQLKMLDLSHNNLTGTVPAGFGNWSQLQDLSLSRNYLTGTVPTTIGNLSNLEVLDFSRNSFYGTVVSAMGQLSSLRILNLQANNLSGEVPQAIFNLSMLEFLSLRENNLFGSLPFSI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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