当前解析结果
SmilChr03G001469| 统一新 Gene ID | SmilChr03G001469 |
|---|---|
| 名称 | SmilChr03G001469 |
| 描述 | putative late blight resistance protein homolog R1A-3 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 17548855 - 17552851 / + |
| NCBI Gene ID | LOC131017935 |
|---|---|
| GeneID | 131017935 |
| locus_tag | - |
| NCBI Name | LOC131017935 |
| 原始查询 | SmilChr03G001469 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-3 |
| 产物 | putative late blight resistance protein homolog R1A-3 |
| Arabidopsis | AT5G35450 (AT5G35450)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=27.8; qcov=0.898; evalue=9.48e-76; confidence=low |
| Rice | Os07g0186500- identity=27.4; qcov=0.855; evalue=8.43e-72; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017935 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057802666.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057802666.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057802666.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057802666.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057802666.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:17549069 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B71 |
Chr3:17549105 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B134 |
Chr3:17549195 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A14,A24,B46,B50,D3 |
Chr3:17549232 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B103,B85,C49 |
Chr3:17549233 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B103,B85,C49 |
Chr3:17549523 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B117,B132,B2,B39,B43 |
Chr3:17549673 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C64,C66 |
Chr3:17549833 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B109,C64,C66 |
Chr3:17550220 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B21,C28 |
Chr3:17550267 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B85 |
Chr3:17550313 |
AG |
A |
1bp_deletion | frameshift_variant | 2 | C64,C66 |
Chr3:17550313 |
AG |
A |
1bp_deletion | CDS_variant | 2 | C64,C66 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802666.1PF00931
NB-ARC 295-464 aa
PF23559
WHD_DRP 547-617 aa
PF23598
LRR_14 669-971 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802666.1 |
Pfam | PF00931 |
NB-ARC | Domain | 295 | 464 | 1.3e-43 | 149.2 | NB-ARC domain |
XP_057802666.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 547 | 617 | 3e-20 | 72.7 | Disease resistance protein Winged helix domain |
XP_057802666.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 669 | 971 | 1.8e-20 | 73.7 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。