Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001470`

染色体: Chr03 坐标: 17553895-17556295 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001470`
名称	SmilChr03G001470
描述	uncharacterized SmilChr03G001470
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	17553895 - 17556295 / `-`

ID 对照

NCBI Gene ID	`LOC131017936`
GeneID	`131017936`
locus_tag	`-`
NCBI Name	`LOC131017936`
原始查询	`SmilChr03G001470`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:826611]; symbol=AT4G10200; hit=AT4G10200; species=arabidopsis; confidence=medium
产物	TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:826611]; symbol=AT4G10200; hit=AT4G10200; species=arabidopsis; confidence=medium
Arabidopsis	`AT4G10200` (AT4G10200) TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:826611] identity=44.1; qcov=1.03; evalue=3.77e-101; confidence=medium
Rice	`Os09g0290900` - identity=35.1; qcov=0.17; evalue=1.66e-06; confidence=weak
GO	GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF05699 (Dimer_Tnp_hAT); PF14291 (DUF4371)
InterPro	-
eggNOG	-
NR	GeneID:131017936

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057802667.1`
2	Cytoplasm	细胞质	0.40000	`XP_057802667.1`
3	Chromosome	染色体	0.00000	`XP_057802667.1`
4	Centromere	着丝粒	0.00000	`XP_057802667.1`
5	Chromatin	染色质	0.00000	`XP_057802667.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:17554839`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B14,B6,C69
`Chr3:17554852`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B136,B14,B44,B6,C69
`Chr3:17554865`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B103,B8,C21,C70,C84
`Chr3:17554883`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A22,B45,B72
`Chr3:17554929`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B128,B132,B86
`Chr3:17554952`	`G`	`A`	EMS_canonical_SNV	stop_gained	70	A10,A16,A18,A19,A2,A21,A24,A5,A9,B103,B11,B111,B112,B118,B12,B126,B129,B131,B134,B137,B138,B140,B16,B20,B24,B30,B33,B34,B36,B48,B54,B56,B58,B60,B64,B65,B7,B70,B73,B74,B86,B91,B96,B97,C1,C15,C16,C17,C2,C20,C24,C30,C35,C40,C42,C45,C46,C5,C50,C52,C57,C63,C65,C7,C74,C75,C76,C79,C86,D9
`Chr3:17555018`	`C`	`CTA`	2bp_insertion	frameshift_variant	12	A2,A3,A8,B121,B19,B63,B95,B99,C56,C61,C64,C87
`Chr3:17555068`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C17,C55,D2
`Chr3:17555102`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B43,C3
`Chr3:17555129`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A3,C62,C69
`Chr3:17555158`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B137,B39,C59
`Chr3:17555202`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B119,B64,C72,C80

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802667.1

435 aa

218

435

DUF4371

Dimer_Tnp_hAT

PF14291 DUF4371 1-68 aa PF05699 Dimer_Tnp_hAT 344-409 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802667.1`	Pfam	`PF14291`	DUF4371	Domain	1	68	7e-13	49.4	ZMYM1/FAM200, RNase-like domain
`XP_057802667.1`	Pfam	`PF05699`	Dimer_Tnp_hAT	Domain	344	409	5.8e-18	65.2	hAT family C-terminal dimerisation region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057946684.1
TTGATTGCACTTCAGATATAAGTCATAATGAACAAATGACTTTAGTAATTCGATGTGTTGATATGACTAGTTCTAGCATAATGATAAAGGAATATTTCATTGAATTTATAAGTGTGGATGATACATCGGGATTAGCTCTTTTCAATGAAATACAAGCTGCTTTAGAATCACTTGGGCTTGATATTGATAATGTGAGGGGACAAGGTTATGACAATGGTTCCAATATGAAAGGGAAACATCAAGTTGTGCAACGTTTGTAT...

CDS

1 records

下载 CDS FASTA

LOC131017936
ATGACTTTAGTAATTCGATGTGTTGATATGACTAGTTCTAGCATAATGATAAAGGAATATTTCATTGAATTTATAAGTGTGGATGATACATCGGGATTAGCTCTTTTCAATGAAATACAAGCTGCTTTAGAATCACTTGGGCTTGATATTGATAATGTGAGGGGACAAGGTTATGACAATGGTTCCAATATGAAAGGGAAACATCAAGTTGTGCAACGTTTGTATACTTTATTTGCAAGTTCTACAAAAAGATGGAAATT...

Protein

1 records

下载 Protein FASTA

XP_057802667.1
MTLVIRCVDMTSSSIMIKEYFIEFISVDDTSGLALFNEIQAALESLGLDIDNVRGQGYDNGSNMKGKHQVVQRLYTLFASSTKRWKFLQDHLNQFTLKSLSTTRWESHINSVTAIITQPNEIREALFELARVSDDAKTRSEAESLATNELENFEFLLGMTIWHNILNKTNLISKKLQSKDMQIDVAIVILKGLISYFEKYREDGFQSALTLAKELASKMEIDPIFPPKRMIRRKKQFDESCQEEITLSDEEFFRINYFLV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器