当前解析结果
SmilChr03G001475| 统一新 Gene ID | SmilChr03G001475 |
|---|---|
| 名称 | SmilChr03G001475 |
| 描述 | probable disease resistance protein At1g58602 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 17712300 - 17716021 / - |
| NCBI Gene ID | LOC131017940 |
|---|---|
| GeneID | 131017940 |
| locus_tag | - |
| NCBI Name | LOC131017940 |
| 原始查询 | SmilChr03G001475 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable disease resistance protein At1g58602 |
| 产物 | probable disease resistance protein At1g58602 |
| Arabidopsis | AT5G43470 (RPP8)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:834367] identity=33.2; qcov=1.03; evalue=1.5e-135; confidence=low |
| Rice | Os06g0286500 (Nbs1-Pi9)- identity=27.1; qcov=1.08; evalue=2.98e-70; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017940 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057802677.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057802677.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057802677.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057802677.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057802677.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:17713012 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B2,B96,C32,C46 |
Chr3:17713017 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B120,B59,C33,C35 |
Chr3:17713125 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B94 |
Chr3:17713412 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C9 |
Chr3:17713451 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D1 |
Chr3:17713522 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B108,C41 |
Chr3:17713553 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C24,C78 |
Chr3:17713680 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B100,B117,B59,C53,C65 |
Chr3:17713724 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A4,B67,C46,D7 |
Chr3:17713737 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B67,C46 |
Chr3:17713787 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B67,C46 |
Chr3:17713833 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A5,B71 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802677.1PF18052
Rx_N 5-86 aa
PF00931
NB-ARC 172-339 aa
PF23559
WHD_DRP 426-503 aa
PF23598
LRR_14 564-877 aa
XP_057802678.1PF18052
Rx_N 5-86 aa
PF00931
NB-ARC 172-339 aa
PF23559
WHD_DRP 426-503 aa
PF23598
LRR_14 564-877 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802677.1 |
Pfam | PF18052 |
Rx_N | Domain | 5 | 86 | 6.8e-19 | 68.5 | Rx N-terminal domain |
XP_057802677.1 |
Pfam | PF00931 |
NB-ARC | Domain | 172 | 339 | 9.7e-35 | 120.4 | NB-ARC domain |
XP_057802677.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 426 | 503 | 7.2e-13 | 49.1 | Disease resistance protein Winged helix domain |
XP_057802677.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 564 | 877 | 3.2e-25 | 89.4 | Leucine-rich repeat region |
XP_057802678.1 |
Pfam | PF18052 |
Rx_N | Domain | 5 | 86 | 6.8e-19 | 68.5 | Rx N-terminal domain |
XP_057802678.1 |
Pfam | PF00931 |
NB-ARC | Domain | 172 | 339 | 9.7e-35 | 120.4 | NB-ARC domain |
XP_057802678.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 426 | 503 | 7.2e-13 | 49.1 | Disease resistance protein Winged helix domain |
XP_057802678.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 564 | 877 | 3.2e-25 | 89.4 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。