Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001485`

染色体: Chr03 坐标: 17910520-17914519 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001485`
名称	SmilChr03G001485
描述	putative late blight resistance protein homolog R1A-10
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	17910520 - 17914519 / `+`

ID 对照

NCBI Gene ID	`LOC131017946`
GeneID	`131017946`
locus_tag	`-`
NCBI Name	`LOC131017946`
原始查询	`SmilChr03G001485`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative late blight resistance protein homolog R1A-10
产物	putative late blight resistance protein homolog R1A-10
Arabidopsis	`AT5G43470` (RPP8) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:834367] identity=29.5; qcov=0.735; evalue=1.58e-69; confidence=low
Rice	`Os07g0186500` - identity=33.5; qcov=0.474; evalue=2.47e-68; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131017946

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057802687.1`
2	Cytosol	细胞质基质	0.20000	`XP_057802687.1`
3	Nucleus	细胞核	0.00000	`XP_057802687.1`
4	Chromosome	染色体	0.00000	`XP_057802687.1`
5	Centromere	着丝粒	0.00000	`XP_057802687.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:17910834`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B33,B38,B39,B40,B78
`Chr3:17910897`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B33,C44
`Chr3:17911004`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B1,B44,B49,B98,C82
`Chr3:17911005`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C64,C66
`Chr3:17911074`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B100,B109,C14,C70
`Chr3:17911109`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B100,C14
`Chr3:17911111`	`C`	`CGA`	2bp_insertion	frameshift_variant	2	B77,B85
`Chr3:17911111`	`C`	`CGA`	2bp_insertion	CDS_variant	2	B77,B85
`Chr3:17911113`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B100,C14
`Chr3:17911115`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B77,B85
`Chr3:17911261`	`G`	`A`	EMS_canonical_SNV	stop_gained	42	A14,A24,A4,B10,B101,B123,B132,B138,B17,B32,B40,B41,B46,B50,B6,B60,B71,B77,B93,C10,C19,C22,C28,C48,C53,C54,C55,C58,C61,C62,C64,C66,C67,C73,C74,C78,C80,C83,C84,C9,D3,D8
`Chr3:17911297`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B45,C82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802687.1

1014 aa

507

1014

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 309-473 aa PF23559 WHD_DRP 557-628 aa PF23598 LRR_14 680-985 aa

XP_057802688.1

1014 aa

507

1014

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 309-473 aa PF23559 WHD_DRP 557-628 aa PF23598 LRR_14 680-985 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802687.1`	Pfam	`PF00931`	NB-ARC	Domain	309	473	1.6e-39	135.9	NB-ARC domain
`XP_057802687.1`	Pfam	`PF23559`	WHD_DRP	Domain	557	628	6.2e-19	68.5	Disease resistance protein Winged helix domain
`XP_057802687.1`	Pfam	`PF23598`	LRR_14	Repeat	680	985	7.8e-21	74.9	Leucine-rich repeat region
`XP_057802688.1`	Pfam	`PF00931`	NB-ARC	Domain	309	473	1.6e-39	135.9	NB-ARC domain
`XP_057802688.1`	Pfam	`PF23559`	WHD_DRP	Domain	557	628	6.2e-19	68.5	Disease resistance protein Winged helix domain
`XP_057802688.1`	Pfam	`PF23598`	LRR_14	Repeat	680	985	7.8e-21	74.9	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057946704.1
GTCCTCTGCTTTCATAATTGATGGTGTTCTTGGAAATATTATAAACCAATCTACTTTTCTTTTCCCTTCTAGATCTCATTGGAAAAATGAAAAATCAATCAAGCAAAGCCACTTTTTTGGATACCACAACAATTAAAAATTATCTCTATTCCTTATTGTAATTTTTTTGATACAAGGTGTCACTTCACGAAAAATACTCGATGAATCATGATCATCATCAATCATCCTGTCGTTAATCTTTCTTCATTTCATTTTCCCAG...

XM_057946705.1
ACTTTTCTTTTCCCTTCTAGATCTCATTGGAAAAATGAAAAATCAATCAAGCAAAGCCACTTTTTTGGATACCACAACAATTAAAAATTATCTCTATTCCTTATTGTAATTTTTTTGATACAAGGTGTCACTTCACGAAAAATACTCGATGAATCATGATCATCATCAATCATCCTGTCGTTAATCTTTCTTCATTTCATTTTCCCAGAAAATAAAACAAAAGAAACCCAAAAATTGTTCCTCATCAGAGATGGCCTATG...

CDS

2 records

下载 CDS FASTA

LOC131017946
ATGGCCTATGCTGCTCTTGTCTCCCTCACAAACACCATAGACCGATTCCTTAACAGCAATCTATATTCCATCTCTGTTGAAGAAAAACAACAAATTACATCTCTCCTTGATTATGTTACTCCCTTTCAAGACTTCCTCGATAAATTTCCAGACAAATTCAAGAGTTTGGAAGAGCGAATGAGGGAAGTGGCAAATGAAGCAGAAGATATCTTAGAATATCTTGTGTTGGAAAAGGTTTTCTTGTCTGCTGATGAAGAGTC...

Protein

2 records

下载 Protein FASTA

XP_057802687.1
MAYAALVSLTNTIDRFLNSNLYSISVEEKQQITSLLDYVTPFQDFLDKFPDKFKSLEERMREVANEAEDILEYLVLEKVFLSADEESEFNDELNRGTVIKDISLKMEKMSNECGRDFLDDAATDNILKGRICDVVNEAEKINSFLKWERNHIRFRDKWRFLPAEFAMLKSKLKFINHLKKMGREIDSIMAEAIAVKNKTATIKEEVQLGDSAAAASSTKMISLHDDDDDDAEEEEEKSECYRSAKLEHQMERVMEEIALI...

XP_057802688.1
MAYAALVSLTNTIDRFLNSNLYSISVEEKQQITSLLDYVTPFQDFLDKFPDKFKSLEERMREVANEAEDILEYLVLEKVFLSADEESEFNDELNRGTVIKDISLKMEKMSNECGRDFLDDAATDNILKGRICDVVNEAEKINSFLKWERNHIRFRDKWRFLPAEFAMLKSKLKFINHLKKMGREIDSIMAEAIAVKNKTATIKEEVQLGDSAAAASSTKMISLHDDDDDDAEEEEEKSECYRSAKLEHQMERVMEEIALI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器